MmuINT0057443 @ mm10
Intron Retention
Gene
ENSMUSG00000026814 | Eng
Description
endoglin [Source:MGI Symbol;Acc:MGI:95392]
Coordinates
chr2:32677553-32677961:+
Coord C1 exon
chr2:32677553-32677690
Coord A exon
chr2:32677691-32677922
Coord C2 exon
chr2:32677923-32677961
Length
232 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTTGGCTCTGTCTTTGCAGGTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
ACTCTCCAGTGCACCATCACAGGCCTGACTTTCTGGGACTCCAGCTGCCAGGCTGAAGACACTGACGACCATCTTGTCCTGAGTAGCGCCTACTCCAGCTGCGGCATGAAAGTGACAGCCCATGTGGTCAGCAATGAG
Seq A exon
GTAAGGCCTGGGAGTAGGAAGGTGTCATGTCCAGCAGAGTCGGTGTCCCCTCAGACACCTCACTGATCCCGGGGCTGAGGGACATTTTGGGGAGCGGGAAGCAGCAGTGAGTAGGAGCCAAAACATAGATGCTGCTAGCTTGGCCCTTCCCACCCATCAGTCAGGCCTGGGAGACAGGATATCCTCTGGGGTCTTTCTGGCTCTGACCGGCTTCTTGGCTCTGTCTTTGCAG
Seq C2 exon
GTGATCATCAGTTTCCCGTCAGGCTCACCACCACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026814:ENSMUST00000009705:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(54.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(14.5=100),PF0010018=Zona_pellucida=PU(3.0=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCAGTGCACCATCACAG
R:
GAAGTGGTGGTGAGCCTGAC
Band lengths:
174-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types