HsaINT0056244 @ hg19
Intron Retention
Gene
ENSG00000106991 | ENG
Description
endoglin [Source:HGNC Symbol;Acc:3349]
Coordinates
chr9:130581901-130582316:-
Coord C1 exon
chr9:130582179-130582316
Coord A exon
chr9:130581940-130582178
Coord C2 exon
chr9:130581901-130581939
Length
239 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCCTGGCTTTATCCCCGCAGGCG
3' ss Score
11
Exon sequences
Seq C1 exon
CATTTGAAGTGCACCATCACGGGCCTGACCTTCTGGGACCCCAGCTGTGAGGCAGAGGACAGGGGTGACAAGTTTGTCTTGCGCAGTGCTTACTCCAGCTGTGGCATGCAGGTGTCAGCAAGTATGATCAGCAATGAG
Seq A exon
GTAAGAGCTGGGGCCAAAAAGGTATCAGGACCAGCCTGGTTGGTGCCCCCTCAGGTGCCCTCCCTGATCCCCCAGGGTGGAGGTGTGTTTGGGAGAGCAGGCTGCAGGGGCTCAGAACACAAGACAAGCTTGGCCATTGGTTGGCTTAGTCTCCCCATCTGCAAAAATGGGCGTATTGGGTGGGATACCCTCTGGGGTCCTTTCTGGCTCTGACCAGCTCCCTGGCTTTATCCCCGCAG
Seq C2 exon
GCGGTGGTCAATATCCTGTCGAGCTCATCACCACAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106991-ENG:NM_001114753:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(53.6=100),PF0010018=Zona_pellucida=PU(1.4=4.3)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(14.5=100),PF0010018=Zona_pellucida=PU(8.4=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGTGCACCATCACGGG
R:
CTGTGGTGATGAGCTCGACAG
Band lengths:
172-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)