GgaINT0124985 @ galGal4
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5829556-5829960:+
Coord C1 exon
chr17:5829556-5829644
Coord A exon
chr17:5829645-5829793
Coord C2 exon
chr17:5829794-5829960
Length
149 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
AATAAAATTTGTTTCCTCAGTGT
3' ss Score
7.35
Exon sequences
Seq C1 exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
Seq A exon
GTGAGTAAATAGAATACTTTTTTTTATGCTTATTGGCATATTTTGATAGGTTGATTTTTCCTCTATGATCAGATGTAGATTATGACAGTCTCTTTAGGAAAATTGGTTGGCTTAATTTTGTATTAAAAAAATAAAATTTGTTTCCTCAG
Seq C2 exon
TGTGAAGGTACAGTTCTCTGCAGAAGCTTCTCACCTGCTGCCTAAAATTTCATTTGTGTCTGACGAAAATGCCACTGCCTTGATTACCAAGCCACCAAAATCTTCTGAAGATAAAAGTGATTCTGTTAAAAGTCCAACGGAGACTAACAAAAATACAGCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTTTGAATAAGAAACCTGAGCA
R:
GCCAGCTGTATTTTTGTTAGTCTCC
Band lengths:
234-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]