HsaINT0071252 @ hg19
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132839578-132842048:+
Coord C1 exon
chr9:132839578-132839657
Coord A exon
chr9:132839658-132841908
Coord C2 exon
chr9:132841909-132842048
Length
2251 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCTGTCTTATTTGAATGTAGGGT
3' ss Score
7.42
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq A exon
GTAAGTAATTCTAAAGTTCCTTCAGTTCAGTCCTAGAGTAGAGTCGGGGAGAATTTAGTAGTATGCTAACATTCCTTGGGTGTCTGCCATGTGCCAGAGACCGTGCTGAGTGCTGGAGATTCAAGACAAGGCTAGGGAGACAGAGGTCCTGTCCTTGATGGGAGAGACAGAACGGAAATACACATGATCACCGCCAAACAGAGAAGTGGAAGGGAAGAACTCATGAATTGTAGAAAGGAAGGAGAGGCTTCAGATAAGTGTTGGCCCAAGCAGCTTTCTAGTGAGTAGCCTTTTACCAGATGAATAAGTAAAGCATTCCAGGCAGAGGGCATAGTCTATGCAAAGGCAGAGTGGAAACAAGACTGGGTCCACGTAATGGCTTCTGCCACTCACCAGCCCTGTGACTCCGGGCCTCAGTGTCCTTACCTACTTCGTGATGATGGTATCTGCCTCATGAGATTGTTGGTGAGGATTTCTGACAATTCAGCCTCTTTGAAAATGTTGAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCCCTTTGGGAGGCCGAGGCGGACGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGACAGGAGAATGGTGTGAACCCAGGAGGCGGAGCTTGCGGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGAGAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAATGTTGAACTTTGATGAATTATCAGACTTTGTGTTTTCAAGTTCAGCATACTTCCAACTGCGTACTTTGTAATTGCTGAGGGAGCCTTTAAGGTAGGAATCATGTGCTCAGACTTGCCTGTAAGGTAGACTCCTAGCAGCCCAGAAGAGGATGGATTTGAGATGAACAAGACTGGAGGTAAGAAGACTAATGAATAAGCTTCTAAAAAAAAAATGCTTTGTCATAAAACCATTGTAGACCCTAACTTTTAAAATATTCTCCGTGATAACCTCTGTTTTCATTTAAGAAGATTGATCTGACAGTCTCCTGTATTGGTCAGTCTACTTTTGGAAGCAAGCAACAAAAGACTTGACTTAGACTCTGGCGTGAATAGTGAAGACATTGATTACCTCACCTATGTGCAGTGGGGCAGGCGAGAGACAGGCCTGCGGTGGCTTGCTGATGTTAGGGACTCTGGTGCATTTCATCTTTCTGCTCTGCCATCCTGAGTGTTAGCTTCTTCCTCAGGCAGGTTTCCCAGCCATCACAAGGTGGCTCTGCTCCATCATTCATATCCAGCCAAGGGACAGAGAGCAGGCTCCTCCTCCAGGTAGAATGAGAAGTGCTTGAATGTGCCAGCTTAGGTTGGGCATCCACTCAGTCATGGGAACTGTCACTGGCCCCTCCTGGGTGGGATGGGGTAAACAAAATTGGGTCTCATGAGAAGGGGGAAGGGTGGAAATGGATATTAGGAGGCAACTAACAGTGCCACTGCCCTCTCGTGCTTCCCTGGATTTCACTTGCTTTCTTTATTTTTTGAGACGGGGTCTCGCTCTGTGGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCATTGCATCCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGTGCATGCCAACACACCCGGCCAGTTTTTTTTTGTAATTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGTTCCTGAATTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCATGCCTGGCCTGGATTTCACTTTAAAGTCTTACTGATGTTTTACATTTTGTCCGTTTCTCTTGTGCACCAATTTGCTGAGCATTTTAACGATACTTAAGGAGAAAGATGTACCTCAGAATTGTGTGGTTACTAAGATCTTAGGCTTAAGAGAGACTACCTGGATCCTCGTCCAACTACTTCCTAGCTTGGTGCCCTTGGGCAAGTTATTTAACGTTTCTGAGCCTCAGTTTTGGTATCTGTAGAATGTGGATAATAGAATCTACATTGTAGAACATGATAAGGACTGCATGAGCTTGGCACAGGGCCTACACGCAGCGTGCTCAGTGGCCAGGAGCACTGCTTTGACCTTTTTTCCTTCTGTCTTATTTGAATGTAG
Seq C2 exon
GGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-GPR107:NM_001136557:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)