Special

MmuINT0072815 @ mm9

Intron Retention

Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31024317-31027601:+
Coord C1 exon
chr2:31024317-31024399
Coord A exon
chr2:31024400-31027461
Coord C2 exon
chr2:31027462-31027601
Length
3062 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TCTGTTTTCCATGGATGTAGAGT
3' ss Score
5.79
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAGAAGTCCATGTCTTCTGTCACTCTTGTCATCTTAGACATCTCTGGAAGCAT
Seq A exon
GTAAGTAATTCCAAAGTTCCCTCTGCTTGCCCTCAGTGCCGTGAGGACAGTAACGGCAGCTGGCGCTCACACATCTACTATATGTCTATCCTACACTGAGTGCTGGAGATAGAGCCCATGTGCAGGGAGACAGAGCCCACTGGGGAAAGCCGACAGAGGACAATCCAAATGACTGACTGCAGCACAGTGGAGGAAAGGAAGAGGGGTTTGCACGCCATGGAAGGACGGATTCAGGTCAGCCTTAGGCCGGCAGCCTGTGGTGAGTCAGCTTTTCCAGATGAATGAGACAGGAAGGGCGTCTGCATCCGCAGGAGAGGGCTGGCCCGTGCAGGAGCATGGTGATGAGCACCGTGTTAGCATCCGAGGTGACTGGTGGGGAACACATTAGAGGAGGTAGGGAGGAAACTGGACAAGGTCCAGGCAGCATCTGCCACTAAGAGGCTGTGTAACTCCAGGGCTCAGTCCCTTTCCTGCCTCACAGTGCTAGTGTCACTTACGAGATTGTCCTTGAGGGATGGCCACTACAGAGCACAGGTGAAGGCCTTTGTCCTTTTGCACTAAAAAAAAAAAAGGTCACTGGTGACGAGTCTGACAACTCAGTCCTTTTAATAAACACATTGGAACTGAGATGAATTAGGGGATTTTGTGTTTTCAAGTTAGATATATTTCCATCTGCCACTGCCTGGGTTTCATGTTTGGGGAGTGCAGCAGAAGATGACGTTGGGTATCTTCCTCAATCATACCCCATTCTCCCACTCCCGTGAGCAGGATCTCATGGTGTAGACCAGGCTGGCCTTGAACTCAGAGATCTGCCTGACTCTGCCTCCCTAGCGCTGAGATTAAAGATGTGCATACCATTAATTAATTCATTAGTCTTAGCACTCACTCAGGAGGCAGATCTCTGTGTGTTCGAGGCCAGCTTCGTCTATAGAGTGAGTTTCAGAACACCAAGGGCTACACAGAGAAACCCTGTCTGAAACAAACAAACAAACAAACAAAGAAAAGGGTGTACACCACCATGGCCAGGGTTCTGCCATTTTTTTCTTGATGAAGAATCTCTCTCTGAGCCTGTATCTTTGCTGAATTGCCTAGATTAGTTGGCCAGTAAACTTCAGGAGTCTCGTGTCTCCACCTTCCCACCACAATGCCCACTTCTACACGAGGATTAGATTCAGGTCTGCATAATTTGGAGGCAAGTCCTTTGCCAACTAAGCATCTCCATGCCCAGCCATCCCAGCTTATCTGTAACTCCCCTCATGTCTACGTTCATTTATTGTGTGGGTGCTGGTCAGAGCATATGGAGGTCAGCGAGCACTCTATGGGAGTCAGATCTCTTCTTCCACTGTGTGGGCTGCTGGGCTGAAGTCAGGTTGTCAGACTTCAGCACCAGCGCTTTTCCCAGTGAACGAGCTCTCTGGCCCTGTGTGCAGTTCCTGAGGAGACTTCAAAGGCTTCCAAGCCAAGAGTACTGTGTCCAGGTTGTTGTCAGACCCAGCTGCTAGCAGCTCGGAGCGGCCACTTCGAGATACACATGGTCAGAAGCAGAAAGAGGAATCTTCCAGTGAGGAAGTCTCTTAAAAAAGGAAGCACTTTGTCATAGAACTACTCTGAGCTTCACTAAGACATCCACCCCTGGTTGCCTCTGCTTTCATCTGTCAGGATGACAGTCTCCTAGGTTAGGGTGTTTGGCACTGGGTAGAGAAGGGCCTGACTGAGCGTGGCAAAATGAATGAACTGGGGATTGACTCCTCACCTGGAGGCCCTCGGTGGCAGCAGGCTCAGGAAAGGGCAGCTCAGTGGCAGAGACTGATTAGGGACCCTTATGCCTTTTACCTCCGCTCTCCTACTCTTAGTGTCCACTTCTCAGGAACACACACACACACACACACACACACACACACACACACACACACACACTGTCTTCAGACACACCAGAAGAAGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTAAGACTTCTGGAAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCTCCTGGTGACACATATCTTTAATTGCAGCACTCAGGAAACAGAAGCCAACAGATCTCTTTGAGTTTGAGGCTAGCTTTGTCTACACAGTAAGTTCCAGGCCAGGGTTACATAGTAATACTCTGTCTTATAAAAGAAAAAAAGAGTGGGGTGCTAGATAGATGGCTTGGTGATTAAGAGCACTCATTAGTCTTACAGAGGACCCAAGTGTGGCTCTCAGCATTCACAGGGGGGCTCACAACCACCTAGAGCTACTTCAGCTCTGGGGGATTGGAAACCTTCCCAGGACCTTGCATGCATATAGTACACATACGCTTGCATATGCACACACAAACATATAATTAATTGTTGAAACAGGGAGAAGAAGGAAATGGCTTTTAGGCCAGTAATTAGTAGTGTCCCTAATTCCTCACACAGTCCCTGGACTTGTCCTGACTGTATTATAGAAGCTGTGTCTTCTGTTTCTCTTTACCAATGTTCTGAGCACACTAAGAATCCTTAAGGGATGTGTGAACAGCATAATTATGTATTTGCTACTACCCTGGCTTAGAGAGAGACTCAGGCTCCTCACTCAGCTGCTTCCTAGCTTGGGGTGGCAGGGCTGGGGCCAGGGTCTGGGCCATGTACAGACTAGGCAAGCACTTTGTCCCTGCATGGTCTCTCTGGTCCTTGGCCAGTGTTTACCTTTTCTGCACTTCAGTTGCAACATAGAATGTAGATGGCAGAATCTACATCTCTGATGTGGCAGGGGTGGCACAAGGTGCCAGACTCAGAGCTGGAGCTGGGCATGGTGGCATATGCTTTTAATCCTAGCAGCTGGGAGGTAAAAGTAGGTGGCTCTCTTGAGCTTGAGCCTAGTGTGGTCTGCTGAGCTAGTTCCAGAACAGCCAGAAACCTTGTCTTCAAAACAAACAAACAAACAAAAAGACGGCTTGAACTGGGCCTACAGCAGTGTTAAAGCAAAGTCTGGAGTGCTGCTCTGAACGCTTCTTTCTGTTTTCCATGGATGTAG
Seq C2 exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGTAAGCAGTTACCAGAGATTGTCTTCAGCAAGGATGAGAAAATCCTGAGTCAGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGTGAGGCTCGGAGAACCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.458
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0400010=Sas10_Utp3=FE(38.6=100)

							
A:
NA

							
C2:
PF0400010=Sas10_Utp3=PD(7.1=10.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000056739





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000056739f9A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:130077375-130079629 
ALTERNATIVE
HsaINT0071252
(GPR107)
Human
(hg19)
chr9:132839658-132841908 
ALTERNATIVE
HsaINT0071252
(GPR107)
Rat
(rn6)
chr3:10675353-10678418 
LOW PSI
RnoINT0066902
(Gpr107)
Cow
(bosTau6)
chr11:100444426-100445602 
LOW PSI
BtaINT0068396
(GPR107)
Chicken
(galGal4)
chr17:5829645-5829793 
ALTERNATIVE
GgaINT0124985
(GPR107)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"