RnoINT0066902 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10675213-10678501:-
Coord C1 exon
chr3:10678419-10678501
Coord A exon
chr3:10675353-10678418
Coord C2 exon
chr3:10675213-10675352
Length
3066 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTCTGTCTTCCATGGATAGAGT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAAAAGTCCATGTCTTCTGTCACTCTGCTCATCTTAGACATCTCCGGAAGTGG
Seq A exon
GTAAGTAATTCCAGAGTTCTCTCTGCTCACCCTCTGCCGTGAGCGTACTAGCTGCAGCTGATGTGCACATATCTGCTATGTGCATGTCCTATACTGAGTGCTGGACATGAGGTCCATGTGCAGGGAGACAGAGCGTGCCTGGGAGGAAGGCAGACAAAGTACAGTCCAAATGACTGCCGCACAGCATAGGAAAGGAAGAGGGGGTTCGCACACCACGCCATAGAAGGGCGGTTTCAGGTCAGCCTTAGGTGGGCAGCCTTGCCGTGAGTCAGCTTTTCCAGATGAATGAGAGCAGGAAGGGAGTCTACATCTGCAGGAGAAGAACAGCCTGTGGAGGAGCATGGAGATGAGCGCTGTATTAGCACCCGAGGTGACCACTGGGGAACACATTAGAGGAGGCAGGTAAGAAACCTCACAGGATCCAGGCGGCTTCTGCCAGAGGCTGTGCAACTCCAGGGCTCAGTGCCCTTTCCTGCCTCACAGTTCTTGTCTTTCTTCTTTGAGATTGTCCTTGGATAGCCACTACAGAGCACAGGTTGAAGACCTTTTTTTTTTATCCACTTAAAAAAAAAAGGTCACTGGTGAGGAGACTGACAACTCAGTCCTTTTAAAAAAGCACATGGGAGCTTAGATGAATTAGGGAATTTTGTGTTTTCAAGTTAGGTACATTTCCATCTGGCCACTGCCTGGGTTTCATGTGGGGGTGCGGCAGAAGATGATGCTGGGTATCTTCCTCACTCGCACCCCATCCTCCCACCCCTTTGAGCAGGATCTCATTGTGTAGATGCACCTGGCTTTGAACTCAGAGATCTTCCTGACTGCCACCACAACGCTGGGATTAAAGACGTGCACACCTTTAATTAACCCATTAGTCCCAGCACTCACTCAGGAGGCAGAGGCGGGCAGACCTCTGTGAGTTCGAGGCCAGCTTGGTCTACAGAGTGAGTTTCAGAACACCAAGGGCAACACAGAGAAACAAAAGAAAAGGGTGTGCACCACCATGGCCAGGGTACTACCTTCTTTTCTTGATGAAGAGTCTCTCACTGAGCCTGAATCTGCTGATTTACCTAGATTAGCTGTCCAGTAGACTTCAGGAGTCTCATGTCTCCACCTCCAAGCACTGGGGCTCATAACACTACGCCCACTTCTACACATGGGTTTAGGATTAGATTCCGGTCTGCATTATTGGAGCATCTCCATGCCCAGCCATCCCAGCTTATGGGATCAGGTCTCTTCTTCCACTTTCTAGGCTTCTGGACTTGAAGTGGGTTGTCAGGCTTAGACAGTGCTTTCCCTAATGATCTAGCTCTCTGACCCTGTGTGTAATTCCTGAGGGAGCCTTGAAAGGTTACCAGCTAAGAATACTGTGCCCAGGTTGTTGTCAGCCCCAACTGCTAGCCGCTCAGAGTGGCCGGTTTGAGATGCGCATGTCAGAAGCAGAAAGAGGAAGCAAAGCTCTTTGTCATAGAACCGCTCTGAGCTTCGCTAAGACACCCACCCCTGGTTACCTCTGCTTTCATCTGTCAGGAAGGCTGCTGGTCTCTAGGTTACGGTGTGTTTGTCAATGGGCGGAGAAGAAGAGGAGACTGAGTCTGGAAAAAGGAATGAGCCCGGGATTGACTTCCCACCTGGAGGCCCTAGGTGGCAAGCAGGCTCAGGAAAGGGCAGCTGAGTGGCAGCTCGCTCACATTAGGGACTAGCTAGGGACCTTATGCCTTTCACCTCTGCTCCCCCACCCTCAGTGTCCACCTCTCAGGCAGTGTCCCAGCTGTCACCAGCTCTGCTTCTCTCATAGCCAGCCAAAGCAAGGAGGAATCGAACACATCCCACAAACAGGTTTACTGTTGTACTGGCCTAGGTCAGGCATGAGTGGATGGCCTGACTGTTAAAAAGGAAAAAGGATAGGTATGGTGATACAAATCTTTTTAAATTTTTAAAAATTCATTTATTTTATATTTGTGAGTACATTGTCTTCAGATACACAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGTAGAGCAGTCAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCAGTGACACATATCTTTAATTGCAGCACTCAGGAAGCAGAAGACAGCAGATCTCTTTGAGTTTGAGGCTAGCTTTGTTCCATGGCAAGTTCCAGGCTAGGGTTACATAGTGAGACTCTGTCTTATAAAAGAAAAAAAGACAGGGTGGTGGATAGATGGCTTGGTCATTAAGAGCACTCATTAGTCTTGCAGAGGACCCAAGTGTGGTTCTCAGTACCACCTATAACCACTTCAGCTCTAGGGGGTTGGAAGCCTTCGCAAGACCCTGTATGCATAGAGTGCACCTAAGCTTGCATGCGCACCACAAACACACATTAATTGTTGAAACAGAGAGAAGGAGGAAATAGCTTTTAGGTCAGTAATTAGTAGTGTCCCTGGACTTCCCCTGTACTATAGAAGCTGTGTCTTCTGTTTCTCTTCACCAATGTTCTGAGCACATTAATAATCCTTAAGGGATGTGTGAACAGCATAATTATGTATTTGCTACTATCCTGGTTTAGAGAGAGACCGTCAGGCTCCTCACTCGGCTGCTTCCTAGCTTGGGGTTTCAGGGCTGGGGCCAGGATCTGGGCCATGTGCAGGCTAGGCAAGCCCTTTGACACTGCACGGTCTCTCCTGTCCTGTGCCGATGTTTTACCCTTTCTGCACCTCAGCTGCAGCACAGGGTGTGGATGGCAGAATCTACATCTCTAATGTGGCAGGGATGGCACAAGGCGCTAGGTTCAGCTGGGCATGGTGGCACATGCCTTTAATCCTAGCAGCTGGGAGACAGAGGCAGGCAGATCTCTTGAACTTGAGGCTGTCGTGGTCTACAGAGCTAGTTTTAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTTGAAAACAAACAAACAAAAAGACAGTTTGAACTGGGCCTACAGCAGTGTTTAGTGAAGGCGGGAGCGCTGCTCTGAACTCTCCTTTCTGTCTTCCATGGATAG
Seq C2 exon
AGTCAAGGTCAGATCCCCACCAGAAGCTGGCAAGCAGTTACCCGAGATTGTCTTCAGCAAGGATGAGAAAGTCCCGAGTCGGAGCCAGGAGCCTGCTGTCAGCTCCAACCCCAAAGACAGCAAGGTGCAGAGAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]