GgaINT0124989 @ galGal4
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5831299-5832773:+
Coord C1 exon
chr17:5831299-5831409
Coord A exon
chr17:5831410-5832639
Coord C2 exon
chr17:5832640-5832773
Length
1230 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
AACATACCATTAATATTCAGATA
3' ss Score
5.24
Exon sequences
Seq C1 exon
TTTTTCTTTAACATCAGTTCTGATGACCAAGAGGGTCTCTACAGCCTGTATTTCCATAAGTGTATTGGCAGTGAAGGGAAAACTCGTGATCAGCAGCTATTTAGTCTTGAT
Seq A exon
GTGAGTATAGCTTCTTAAGTGTAATTAACTCATTCACTTTATCTAAAATATATAACTTCCAATTGTAGCTTGTATACCAAGAACATGTGGTATATGAGTGTATATATGGGGTGGGAAGTGATTCAGAGCTGTGCATTTAATCTCTGTAGTGGCACTTCTGAAGGCAGCAACTACAGTAAGAATTAAAATACAACTTCTAGAGAAATGTTTGGAAATATGAAGGCTACATGTGGGCTTCAGTGTACACAGTTGTGACTGGTACTGTAATGAAGTGAGAGCTAAAACAGCTCATGTCTGGCTGCTGTCAGAAATCTTCTCTTTACACAATTACAGATATTAAGAGTTATTGCAATTTAAATAGTTGGTATTTATGAATTTGCAGGGCTTTTTTTTTTTGCTTTTTTTTTTTTTTATCCTGAATCAGGATGCATTTTTACACTGCTCAGTGAGTATTCCTAAGGGAGTATTCATATAATCATATAATTCATATAATTTTATAGCACATATCCTATCTCTTTTAACATCTGGGGGTTCAGTTCTGTGCTGTGTTGAGCCAGAGTGTAATAGAACAGCTCAGGCTGTGGATGTTGTTCTGAAAATGTTTTGAAACTCTTGAGGATGATGAGCTGTTTCTACATAGGTCACTCTGAAAGTGATGCCTCCTATTCGTTTCCATGGAAATGGCAGCAGGTACAAGGAGCACAGTAACACTGTTTGATAAAGCAATTTCTTAGCTACAAAACACTATTTTTCAATATAGTCACCACCATTAGCTCTGCATTTTTGCCAGCACCCCCCACCTCACTGTGCTAATATCCACTGTTTGGTATCCATAAGTGTTCAGCAAGTATTGATGAACATCAGTAGGTGCAATATTTTCCATATCAGGGAATTCAGTGGCACACCTTTGCTTCATGTGCACTTTTGTGTCAGACACCATTTGTCAGTCTGCCCCCTCTGCTGCCATCTGTCACATGGCAACAAAATGTAATGGAATACTGGTGGGAAGGTTCATCCCTACTGCCATATGACCAGCATTCACCTTTGATGTCGTGGACCAACACAATAAAATAGGAGGCATCACTTCTGGAGTAGCCCTTGAATTTTTTTTTTTATTTGGGTCTTATAACATTATCTCTCCAGAAAGACTAATTGTAAATGAAAGAGTCTTTGCAGGAGTGCTCTAGCCAAATGTTTTAACTGTCTGCATAACATACCATTAATATTCAG
Seq C2 exon
ATAGAAATTACGGAGAAGAACCCTGAAAGCTACCTCTCAGCAGGTGAGATCCCACTGCCAAAACTTTACATTTCCATGGCACTCTTCTTTTTCCTGTCTGGAACTGTGTGGATCCACATACTTCGTAAACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(9.9=78.4)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACATCAGTTCTGATGACCAAGA
R:
CGGCGTTTACGAAGTATGTGGA
Band lengths:
238-1468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]