MmuINT0072819 @ mm10
Intron Retention
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31177785-31178387:+
Coord C1 exon
chr2:31177785-31177895
Coord A exon
chr2:31177896-31178253
Coord C2 exon
chr2:31178254-31178387
Length
358 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCACCTTATGTTGGTTTCAGATT
3' ss Score
8.37
Exon sequences
Seq C1 exon
TTCTTCTTTAACATCAGCACCGATGACCAGGAAGGCCTCTACAGCCTTTACTTCCACAAGTGCTCAGGCAACAACGTGAAGCCTGGTGAACAGGCCTCATTCAGCCTGAAT
Seq A exon
GTGAGTACCTCACGGGACATCGATAGGGATGCTGTCAGGGTGAGACAGCTGCTTCTCTAGGCACTAGACTAGGGTGGAATCTGCGAGAGGCTTTCTGTTTTAGTTTGCTTTGGTTCTGGTACTAGCAACACAGCAGGGCTTTGTGCATCCTGAGGGTATGTGAACCGCTACAGTGAGACATGGGGCTGGTCAGGACGCTCCCGAAGAGGACTGGGTGGGTGTGTCCTCCAGCCCAGACAGTAGCAACCTGCTTGTTACAGGCTGGCACACATGCTCTCCAGAAGTGAGACAGCTGAGTGTGTATTCCTGACTAGAGACGGCCTGTTTCTAAGGGGGACGCACCTTATGTTGGTTTCAG
Seq C2 exon
ATTGCTATCACAGAGAAGAACCCTAACAGCTACCTCTCTGCCGGGGAAATCCCTCTCCCCAAGTTATATGTTTCCATGGCCTTGTTCTTCTTTCTGTCTGGGACCATTTGGATTCACATCCTTCGTAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194:ENSMUST00000056433:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(11.8=78.4)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACATCAGCACCGATGACCA
R:
CTTCTCTTACGAAGGATGTGAATCCA
Band lengths:
238-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types