HsaINT0071256 @ hg19
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132853155-132854660:+
Coord C1 exon
chr9:132853155-132853262
Coord A exon
chr9:132853263-132854526
Coord C2 exon
chr9:132854527-132854660
Length
1264 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TAATTTCATGCTGGTTTCAGATT
3' ss Score
6.19
Exon sequences
Seq C1 exon
TTTTTCTTTAACATCAGCACTGATGACCAAGAAGGCCTTTACAGTCTTTATTTTCATAAATGCCTTGGAAAAGAATTGCCAAGTGACAAGTTTACATTCAGCCTTGAT
Seq A exon
GTGAGTACTGTTTGGAGATTGTTCTACGTGGATTTTGTCAGCATAAAACGGGAGATTTGTTTCTGTATAAGATTAGATTTTAAGAATACTTAAGAAAAGAATGTGGGCAGACACACATTCCTGCCACTGTGCAGGATACTTCAGCAGAGGATTCATAGGAAAATACAAAGCAATTTAGGATGTGTCTGCACTTTAACCTGTGCGTTAAGAATGTGGTTGTTTTGGCTGGGCATGGTGGCTCATGCCTGTAACCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGTCCAAGAGTTTGAGACCAGTGTGGGCAATATGGCAAAACCCTCTCTCTACAAAAAATGTGAAAAATTAGCCAGGCGTGGTGGTACACACCTCTAGTCCCGGCTACTCAGGTGGGAGGATTTCTTGAGCCCAGGAGGCAGAGGTTACAGTAAACCGAGATTGCATCACTGCACTCCAGCCTGGGCAAAAGGGTGAGACCCTGTCTCAAATTAAAAAAAAAAAGTGGTTGTGTGGTTATTTGCTGGTACTCACTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCATTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTTGCCTCACCGCAACCTCCATCTCCTGGGTTCAAGTGATTCTCCTTCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTTTCACAATGCCTGGCTAATTTTTTTTTTTTTTTTTCCAGACGGAGTCTTGCTCTGTCACTCAGGTTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTGTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAAGGGTGCGCCACCACACCTGGCTAATTTTTGTGTTTTTCGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTAACCTTGTGATCCACCTACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCCCTAATTTTTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTGTTGAACTCCTGATCTCAGGTGATCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACCATGCCCAGCCACTGGTACTTACTTTCTTAAGCTTAAGTGAAACAACTGAGATTCCAAATTGCTGAATAAGGGATGATATGTTTCTGAAAAGTAAAAATTAATTTCATGCTGGTTTCAG
Seq C2 exon
ATTGAGATCACAGAGAAGAATCCTGACAGCTACCTCTCAGCAGGAGAAATTCCTCTCCCCAAATTATACATCTCAATGGCCTTTTTCTTCTTTCTTTCTGGGACCATCTGGATTCATATCCTTCGAAAACGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-GPR107:NM_001136557:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(12.4=77.8)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACTGATGACCAAGAAGG
R:
ATATGAATCCAGATGGTCCCAGA
Band lengths:
214-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)