RnoINT0066906 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10669090-10669737:-
Coord C1 exon
chr3:10669627-10669737
Coord A exon
chr3:10669224-10669626
Coord C2 exon
chr3:10669090-10669223
Length
403 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCACATTGTGTTGGTTTCAGATT
3' ss Score
8
Exon sequences
Seq C1 exon
TTCTTCTTTAACATCAGCACCAGTGACCAGGAAGGCCTCTACAGCCTTTACTTCCACAAGTGCCCAAGCAGCAAGCTGAGGTCTGGTGAGCAGGTCTCATTCAGCCTAAAT
Seq A exon
GTGAGTACCCAGGGGACACCCACAAGGATGCTGTCGGTGTGAGACGTCTGCTTCTCCAAAACACCAGGGTGGACACCGGGAGGTTTCCTGTCTCATTTTGCTTTGGTTCTGGTGCTAGCAAGCAGCAGGGCTTTGTGCATCCCGAGAGCACCCATCGCCGTTGAGGGTCTGTGAACCGCTGCTGTGAGGAAGTGGGGCCAGTCAGTACCCTGCAGTGGGCAGGGTGCTCCTACAGAGACTCGGGAAGAAGAGAGCAAGAGCTGGGCAGGCCATGTCTTCCAGCTCAGACAGTAGCAACCCGCTTGTTACGGGCGGCGCACATGCTCTCAAGAAGTGAGACAGCTGTGAACGTGCTCCTGACTAGACAGTCTGTTTGTAAGGATGCACATTGTGTTGGTTTCAG
Seq C2 exon
ATTGATATCACCGAGAAGAATCCTGACAGCTACCTGTCTGCAGGGGAAATCCCTCTCCCCAAGTTATACGTTTCCATGGCCTTGTTGTTCTTCCTGTCTGGGACCGTGTGGATTCACATCCTTCGTAAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PU(35.4=78.4)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAACATCAGCACCAGTGACC
R:
TCGTTTACGAAGGATGTGAATCCA
Band lengths:
239-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]