GgaINT0125005 @ galGal3
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
NA
Coordinates
chr17:8992296-8995122:-
Coord C1 exon
chr17:8995028-8995122
Coord A exon
chr17:8992413-8995027
Coord C2 exon
chr17:8992296-8992412
Length
2615 bp
Sequences
Splice sites
5' ss Seq
TTAAAGGGG
5' ss Score
-23.77
3' ss Seq
NNNNNNNNNNNNNNNNNNNNGGT
3' ss Score
0
Exon sequences
Seq C1 exon
CCGGCGTCCCCGGGGAGGAACCCAAGTGCAACATCTGCCTGGAGAAGACATCAAGGCCCAGGAATGAAATCCTCATCTGCGGGAAATGCGGTTTA
Seq A exon
AAGGGGTGCGGGCGCGTGGCTCTGTGTCCTGCTGCGTCCTGCGGCGTCCGGAATCCNNNNNNNNNNCATGGCACTGCATGGCATGGCATGGCACAACACAGCACTGCATGGCATGGCACAGCACAGTGTGGCGCTGCATGATCTCTGACCCCTACAAGGGCACCCCAAGACTATTTGGACCACTCCTTCGGATTATTGGGATCGTTTCTGGATCTCTCAGGAAATTCCATGCGGGGTTTTGGGTGCTGTGCTGCAGATGCTGCATTTGCTGCTGCCACGGCTGCTGGAGCGCTCCCATCCAGGAGCTGTGAAATGCAATGAATCACCCCAAAATGCAATGAATCACCCTGAAACCCGCACTGTGCCCTCCCCGCTCTCCTCTCTCGCTCCCCGCAGAGGCAGTTGGCGGCCGCAGCGCTGTCGGTCCCACGTGTTTCTGAGCCCGTGCAGAGCCGCCCGCCGCGCAGCGCGATGCCAGCGGTTCTGGGAGGCTCTGGTTTGCAAAAAGGAGCAACGACAAAACTCCTCCGAAGAGGACAGAGTTCCGCAGCGCTCTCCGAGAGGTGACTTTAGCACCGATGCGCCGGGAGCGGCTCCGCGTGCGCTGCTTCCACGCAGGTGCGCGACGAACGGCGGTGCGGGGAAGCGCTGCGCGGGGCGACGGGGGGCGCACGGAGCGCTCCGCTCCGAACCCGGCGGATTCGCCGCCGCCCGGGCGGGCCTGGAAACGTTTCTTTTCTTTCTTTTTTTTTTTTTTTGGCAGCGCTCTCCCGCAAATAGCGAAGCCTGCAGCCTCTCGGCACCGCCCGGAGCGGTTCGCACCGACGGATTTGGTTGCTTTTTTTTTTTTCCTTTTTTTTTTTTTTTCTTTTTCCGTTTGGATTCGGAAAAAAACCACCCCCGGTTCCCGGAATCGCGGCGAGCGGCAGCACGGGCCGTTCCCTGGCGCGGGGCCGGGGGGCGTCTGGGGCACCCCGGGAAGCTCCTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Seq C2 exon
GGTTACCATCAGCAGTGCCATGTCCCGGTGGCGAGCAGTGATGAGGGCCCGTTGGGGACGCCGTGGTTCTGCCGCCGCTGCATCTTCGCCCTGGCCGTGCGGGTGAGTGGGGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(18.6=34.4),PF144461=Prok-RING_1=PU(65.9=84.4),PF0013017=C1_1=FE(59.6=100),PF036609=PHF5=PU(43.3=90.6),PF0062824=PHD=PU(42.6=71.9)
A:
NA
C2:
PF144461=Prok-RING_1=PD(29.3=30.8),PF0013017=C1_1=PD(30.8=41.0),PF036609=PHF5=PD(53.7=92.3),PF0062824=PHD=PD(53.7=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]