HsaINT0123952 @ hg19
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:24566]
Coordinates
chr9:123632123-123632816:-
Coord C1 exon
chr9:123632721-123632816
Coord A exon
chr9:123632224-123632720
Coord C2 exon
chr9:123632123-123632223
Length
497 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CGCCCCCTCCTCTGCCGTAGGTT
3' ss Score
10.41
Exon sequences
Seq C1 exon
CCGGTGTTCCAGGAGAGGAGCCCAAGTGCAACATCTGCCTAGGGAAGACATCAGGGCCGCTGAATGAGATCCTCATCTGCGGGAAGTGTGGCCTGG
Seq A exon
GTGAGTGGAGCGAGCAGGGCCCTGAGAAGGCCCCGACCTATAGGTCCCCACGCACTGGCCCCTGACGGGTACTGCTGCAGCCTGTTGGGGCCTCAGCTGGCTTCCTGTTTCTCTTGGCACTGCAGGGTGAAAGGGGGCCAGTTGCTGTAAGTGAGGGCTTGGGAAGAGATCCTGGGGAAAGCTGGGAGGGTATGATGGTGTATGTAATTTGGGGCCCAGCTAGATGGAGAGGATGGGTGGGAAAGATGGGGCTCAGGCACTGAAGTCAGACCTTCCTGTGTCCCCCCCAACCCCACAACTGGCCAATGCTGTCATTTAGTTCCCAGCCTGGACACTGACTTGGCCATCTTGGTGGGCACCAGCAGCCAGGCTCCCGGCAGCTGGCAGGCAGAGCTCCTAGGACTTCCCTCAGCCCTCCCAGCCCTGCCTCCTTTGGGCCAACTGGCCTTGGGCCACGATGTCCTTGTGGGCGCTCACCGCCCCCTCCTCTGCCGTAG
Seq C2 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCTGACCAGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCACTGGCTGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-PHF19:NM_015651:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(18.6=33.3),PF144461=Prok-RING_1=PU(65.1=84.8),PF036609=PHF5=PU(43.5=90.9),PF0013017=C1_1=FE(69.6=100),PF0062824=PHD=PU(44.4=72.7)
A:
NA
C2:
PF144461=Prok-RING_1=PD(32.6=41.2),PF036609=PHF5=FE(47.8=100),PF0013017=C1_1=PD(21.7=29.4),PF0062824=PHD=PD(53.7=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGTTCCAGGAGAGGAG
R:
CAGCCAGTGCGAAGATGCA
Band lengths:
192-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)