GgaINT1021404 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8291536-8291819:-
Coord C1 exon
chr17:8291724-8291819
Coord A exon
chr17:8291637-8291723
Coord C2 exon
chr17:8291536-8291636
Length
87 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GACCCCGAGCCCTCCCGTAGGTT
3' ss Score
3.4
Exon sequences
Seq C1 exon
CCGGCGTCCCCGGGGAGGAACCCAAGTGCAACATCTGCCTGGAGAAGACATCAGGGCCCAGGAATGAAATCCTCATCTGCGGGAAATGCGGGCTGG
Seq A exon
GTGAGTGCGGGCGCGTGGCTCTGTGTCCTGCTGCGTCCTGCGTGCGTCCGGCCAGCTCGGTGATGCTGACCCCGAGCCCTCCCGTAG
Seq C2 exon
GTTACCATCAGCAGTGCCATGTCCCGGTGGCGAGCAGTGATGAGGGCCCGTTGGGGACGCCGTGGTTCTGCCGCCGCTGCATCTTCGCCCTGGCCGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(17.2=30.3),PF0013017=C1_1=FE(64.0=100),PF144461=Prok-RING_1=PU(68.3=84.8),PF0062824=PHD=PU(44.4=72.7)
A:
NA
C2:
PF0013017=C1_1=PD(30.0=44.1),PF144461=Prok-RING_1=PD(29.3=35.3),PF0062824=PHD=PD(53.7=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAACCCAAGTGCAACAT
R:
CCAGGGCGAAGATGCAGC
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]