DreINT0113290 @ danRer10
Intron Retention
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12353108-12355001:-
Coord C1 exon
chr8:12354906-12355001
Coord A exon
chr8:12353203-12354905
Coord C2 exon
chr8:12353108-12353202
Length
1703 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGCTTGTCTTGCATCTTCAGGCT
3' ss Score
8.8
Exon sequences
Seq C1 exon
CTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAG
Seq A exon
GTGAGTGTGAAGCAGACATCAGTGCTGTCTGCATCCAGGCTCATCAGGAAACTGGGATGTATCTCAATGAACAGCTTGTTTCTGCTCGAAGAAAGTAATGAATCATTTGAAGAACTATTGACTCAAATGTAACCTTATTAGTGGAGCTTGCAGAGGAGAGAATCAGTCTTATTATTACTCATACTTAAAGAAACGTTATATAGGTGTATTGAGATGCATGCTGGTGTGTTGAGGTGTATTGTAATTAAAGATGGATACAACGGCATGTAGCTATTATTTAAAGTAATATTTTTGAGGCAATTATTGTAATATCTGGTAGTAATATAATGTATTACTATATTAGTTGCAAGTAATATATTTAGTTGGAAAAAATAACTATTAATATAGTTGTAATTAAATAATAATAAGAGTTTATTTTTAAATAATGCATTTTAACTATTTGTAATGCAAACTTTCTCCATTTCTTTACATGTTTATTTAGTTAATCATTTGCATATCTAAATAACATATCTTAAATTTTTAAAGAAACAATACAAAACAAAAAGAGTACCTCAGGATATGGGGGTCCAAAATAACAAACAAAACCACCAATTACTAATTTAAGACAAACTAACTTACCTAACAAAATAAACATTCCCAAAATAAAGAAAATACATATTACTTCCCTTTCTCCCTGCCTACCCACCAAAACAGGAGAAAAAGGTTTTAAAACAAAAGACACCCCACACCTTACACATACCAGCAACTTGGTTCACATTACAAACATGAAACAAATAGAAGTCTGAAGCCCCTGGTATCTGGGACTGGAGCAGCTCAAGTGAGTTATGTCGTCTCCCCTCTCCCTTGCCTTCTGGTCGGCTGCAGCCAGCATAGATTAGCTGTGCAGATTGGACTCAGGTGGCATCAATCTGTAAACAAAAGAAATCAGACAACAAAGGAGAAAACTGCAATATAGAAACAAAAATAAAACAGTCACGGGACGTAACAACGTTGAGAGTGTTTAAACAAGAGAGAAATGTGTGAAAATGTTAATGCCTGTCTGAGAAAAGTGTATAAAGTGTGTAGTGAGGGGTTTTAAAGTCTTACATCATCTATAATAATTGTAAAAAATAAAGCACAATATTTTGTATTTCACCTATATTAGTTTTTTTTTTTAGAATGTTACTCGTGCGAATGATGAGGGACCACTGTAAATTACAAATTAAAATGTTAGTGTTATAGGACCAGAGCCTTTTTTGATAAGTAGAAAATAGAACAGCACTCTTCAAAAAAAAAAAGTGGAAATGGAGTTATATAGATGTTGCCATGACTTCTTGCATGACGCAATGACTGGGGAACTCTTCTGCCTGTGGACAAAACTGATTAGCATGTGCTTGTGATAATGTATTTTAAAAGACTGGAGTGGAAAATGCGCTGTGATTTGCATTATAAACGCCGTGGCGTCTACAAAGCAAATAGAGAACTATTCTGGGTGTCTTTGATGGTGTTTGGTAAGACTGCATTACAGTAATGACTCGCTGGGGACGCAGAAGTGGCTCTCTGAAGTCTCAAGGATTAGTGTCGACTTCATCTCTGCTGATCATATTTACACATCTGATTGGCTTTGAGTAGATCTGTTGGGTTTTTTTTTCTTTTGGTTTGTGTGTGTGTGTGTGTGTGTGTGCTAACATTTGTCCTTCCTCATGCTTGTCTTGCATCTTCAG
Seq C2 exon
GCTTTCATCAGCTCTGCCACTTGCCCACGGTGGAGAGCTCAGCTGACCCATCGCCTTGGTTCTGCAGAAGGTGCATTTTTGCCTTGGCTGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050:ENSDART00000142150:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(46.2=72.7)
A:
NA
C2:
PF144461=Prok-RING_1=PD(31.0=40.6),PF0062824=PHD=PD(51.9=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]