HsaINT0123952 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120869845-120870538:-
Coord C1 exon
chr9:120870443-120870538
Coord A exon
chr9:120869946-120870442
Coord C2 exon
chr9:120869845-120869945
Length
497 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CGCCCCCTCCTCTGCCGTAGGTT
3' ss Score
10.41
Exon sequences
Seq C1 exon
CCGGTGTTCCAGGAGAGGAGCCCAAGTGCAACATCTGCCTAGGGAAGACATCAGGGCCGCTGAATGAGATCCTCATCTGCGGGAAGTGTGGCCTGG
Seq A exon
GTGAGTGGAGCGAGCAGGGCCCTGAGAAGGCCCCGACCTATAGGTCCCCACGCACTGGCCCCTGACGGGTACTGCTGCAGCCTGTTGGGGCCTCAGCTGGCTTCCTGTTTCTCTTGGCACTGCAGGGTGAAAGGGGGCCAGTTGCTGTAAGTGAGGGCTTGGGAAGAGATCCTGGGGAAAGCTGGGAGGGTATGATGGTGTATGTAATTTGGGGCCCAGCTAGATGGAGAGGATGGGTGGGAAAGATGGGGCTCAGGCACTGAAGTCAGACCTTCCTGTGTCCCCCCCAACCCCACAACTGGCCAATGCTGTCATTTAGTTCCCAGCCTGGACACTGACTTGGCCATCTTGGTGGGCACCAGCAGCCAGGCTCCCGGCAGCTGGCAGGCAGAGCTCCTAGGACTTCCCTCAGCCCTCCCAGCCCTGCCTCCTTTGGGCCAACTGGCCTTGGGCCACGATGTCCTTGTGGGCGCTCACCGCCCCCTCCTCTGCCGTAG
Seq C2 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCTGACCAGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCACTGGCTGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PD(17.2=30.3),PF144461=Prok-RING_1=PU(65.1=84.8),PF0062824=PHD=PU(44.4=72.7)
A:
NA
C2:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGTTCCAGGAGAGGAG
R:
CAGCCAGTGCGAAGATGCA
Band lengths:
192-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development