GgaINT0125060 @ galGal3
Intron Retention
Gene
ENSGALG00000001226 | E1C8X7_CHICK
Description
NA
Coordinates
chr17:822061-823258:-
Coord C1 exon
chr17:823040-823258
Coord A exon
chr17:822393-823039
Coord C2 exon
chr17:822061-822392
Length
647 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTGTCTGCTTGTCCTCACAGCTG
3' ss Score
10.4
Exon sequences
Seq C1 exon
CGCGTCCTCTTCACTGCACCGGTTCTGGAGCAGCTGACGTGTGAGCAGAGCTCGGGGACGCTGCGCCGCCTCCTGCGTGTGGCTCCCAGCCAGCAGCCGCTGCTGCAGGCGTACCGCGTACTGGTGTGCAACGGCAGCCAGGCAGCCCGCAAGGAGCGCTTTGCTCAGCTGGCTGCCGAGCTGCGGGACCAGATGGACACCCCCAAGATTGTCAGCAGG
Seq A exon
GTGAGCGCAGGCCGGGCCTGGCATCTGTGGCCGCAGGGCATGGGGGGTGGGCGGTGGGCCAGGGCTGTTCCAAACTGCTTTTCTCCAACCGCCAGGGGTTGTGCGGGGATCCTTGGCCAGCCCAGGTTTCTGAGACGTACTTCAGTACGTGCCTTGGCCCCCCCTTAGCCTGCGGGGACTGCCCAGGCCCGTGGCCTGCTGGGAGTGGCCTCCTGGCTCCGGGGGCACTGCAGCCGATGTCCCCTTCCCGGCACCTAATCTGGCACTGTCTGTTGGACGTGGTGTCCCCAGTGTCCTCCCGGCTTGTCCCTACAGGGCCTACCCAGGGTTCCCTGAGAATGGCAGTGCCATCAGTGAGCTGTGCACTCCTCAAGGCTGTCTCTGCGGTCCCCCTCCTCATCCATCCTTGTCTGATGGATGTCTCACTTGTCCCCCAGCAAGACCTTGCCAGAATTTGGCCATATTCCTGCTGCCTGATTGCTGCAGATGTGCCGTGATGAGTCCTGGACACAGCTCCAACCTTGTAACCAAGAAAGGGGACATGACATCACTTGGGGTTCCATTGGCCCCCTCCCCTTGGCAGCAGGCAAGCAGGGCCACTTCAGTGCCCTGGCCACATGTAATCCCTTGTCTGCTTGTCCTCACAG
Seq C2 exon
CTGCAGCTGGATGAGGTGAACAGCACAGCAGCCCAGCACCAGCTCCGCACCCTCCTGGAGGACCTCGTGGAGATGGAGAAGGTTCTCCGTGACATGGACATCCTCTCAGCGCTGGCCAGGCTGCTGCCCAGGGGGGCCTGTGCCACCAAGGCTCCACCGCCCACAGCCAACAGCACCGGCTGGGCCAGCACGAACGCCACTGCCAGCAATACCACGACGGAGGAGGAGGGTGCCGGGGGGGACCCAGCGGACGGTGACAATCCCCAGGGGCAGTTCTCAGCCTTTGTGCAGCTCTGGGCTGGGCTGCAGCCCATCCTCTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040504:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCCCCAAGATTGTCAGC
R:
GTTGTTGCCACAGAGGATGGG
Band lengths:
354-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]