MmuINT0007831 @ mm10
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25434309-25435257:+
Coord C1 exon
chr2:25434309-25434527
Coord A exon
chr2:25434528-25434889
Coord C2 exon
chr2:25434890-25435257
Length
362 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGCCTGGTCTTCCCCTCAGCTG
3' ss Score
8.03
Exon sequences
Seq C1 exon
GAGCTGCTGCTGGCTCCTGCCCTTTTGGAACAGCTCACATGTGCTCCAGGTTCTGGGGAACTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTGTGCAGTGGGCAGGCTACAGCTCGTGCCCAGCGCTTCAGCGATTTGGCCGCTGAGCTCAGGAACCAGCTGGACACAGCCAAGATTGCTCAGCAG
Seq A exon
GTGAGGCCCTGCCTGCCAGTTGGCCAGCAAACCTGTTGACCAGCCTGGAGGAGGTGCTGGGGTAGTTGGAGCCCGAGGATGGGAGAGACTCCTGCTTCCAGGCATTGCATGAGCTGGTGGTAACAGAGCATTCAGTACCGTCTACACTATCTCAGGCTCCTTTTCCTCCCCATCTCTCGGCCCAAGTTGTACCTCTAACCCTGGCCAGGTGTTCCCAAGCTGCAGACCCTCCCTCATCTTACTCAAGTACTGTCCCCTGCTGATACCCTCCCTGCCCCACTCCTGATCTTAGTCACTTCCCTGAGTCACCTCCAACCAAGTTTCCTAGCCTGCATTTTCCACATGCCTGGTCTTCCCCTCAG
Seq C2 exon
CTGGGCTTCGATGTCCCCAACGGCTCAGATCCCCAGCCACAGGCACCGTCCCCACAGAGCCTGCCGGCACTCTTAGGGGACCTGCTGGATGCCCAGAAACTTCTGCAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCAGGCCTCTGCACCTCAAGCCAGCAGCCTGAATGGCCTGGCCAACAGCACCGGGATAGGTGCAAATTCAGGTTCCAACACCACTGTTGAGGAGGGCACCCAGTCACCTGTCAGCCCAGCCTCTCCTGACACTCTGCAAGGGCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAACCCATCTTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944:ENSMUST00000102919:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAGCCAAGATTGCTCA
R:
CAGAGCTGCACAAAGGCTGAG
Band lengths:
357-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types