RnoINT0010219 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2654542-2655489:+
Coord C1 exon
chr3:2654542-2654760
Coord A exon
chr3:2654761-2655121
Coord C2 exon
chr3:2655122-2655489
Length
361 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGCCCGTTTTTCCCCTCAGCTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAGCTGCTGCTGGCTCCTGCCCTTTTGGAGCAACTCACATGTGCTCCAGGCTCTGGGGAGCTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTCTGCAGCGGGCAGGCTACAGCTCGTGCCCAGCATTTCAGTGATCTAGCCACTGAGCTCCGGAACCAGCTGGACATAGCCAAGATTGCCCAGCAG
Seq A exon
GTGAGGCCCTGCTTGCCAGTTGGCCAGCAAACCTGTTGACCAGCCTGGCGGAGGTGCTTGGAGCCTGAGGACGGGAGAGGCTCCTGCTCCTAGGCCATGCATGGGACGGCTTGTCATTGAGCAGTCAGTGCCATCTACACAATCTCAGGCTTCAGTTCCTGCCCATCTCTCAGTCCAGACTCTATCTCTAGCCCTAGCCAGGACTTCCCAAACTGCAGCCCTCCCTCATCTTACCCAAGCACTGTCCCCTGCTGATAACCCCCTGTCCCACTCCTGATCTTAGTCACCTCCCTGAGCCACCTCCAACCAAGTTCACCTGTCCCCTAGCCTACATTTTCCACATGCCCGTTTTTCCCCTCAG
Seq C2 exon
CTGGGCTTCAATGTCCCCAACGGCTCAGATCCACAGCCGCAGGCACCGTCCCCACAGAGTCTGCAGGCACTCTTAGGGGACCTGCTGGATGTCCAGAAGGTTCTACAGGATGTGGATGTCCTATCAGCCCTTGCCCTGCTGCTGCCTCAAGGTGCCTGTGCTGGCCGGGCCCCCGCACCTCAAGCTGGCAGCCCGAGTGGCCCGGCCAACAGCACCGGGGTAGGGGCAAATACAGGTCCCAACACCACCGTTGAGGAGGGCACCCAGTCACCTGTCACCCCAGCCTCTCCGGACACTCTGCAAGGCCAGTGCTCAGCCTTTGTGCAGCTCTGGGCTGGCTTGCAGCCCATCTTGTGTGGCAACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.537
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGCCAAGATTGCCCAGCA
R:
CAGAGCTGCACAAAGGCTGAG
Band lengths:
354-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]