GgaINT0125176 @ galGal3
Intron Retention
Gene
ENSGALG00000003830 | NUP214
Description
NA
Coordinates
chr17:6734044-6734291:+
Coord C1 exon
chr17:6734044-6734129
Coord A exon
chr17:6734130-6734207
Coord C2 exon
chr17:6734208-6734291
Length
78 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
GAACTCTCTTCTGTTTTCAGCTA
3' ss Score
9.01
Exon sequences
Seq C1 exon
TTTTGACAGTGACCTTGAAAGCCTGCGCAGTGCCTTGATGAAAACTACCTTGGAATCACGTGCCAAACCCCCACCTAAAGCACCTG
Seq A exon
GTAATGTATTCTTTCTTCCTGGTATTCATGTATAAATGTTAAAGCTTTGGTAAAGACTGAACTCTCTTCTGTTTTCAG
Seq C2 exon
CTAAGTTGTCCCCTGTGAAGCTGACACAGTTGAGGAATTTTCTAGCCAAGAGGAAGACTCCACCAGTTAGGTCTATGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830:ENSGALT00000006070:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGACCTTGAAAGCCTG
R:
CTGGAGCCATAGACCTAACTGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]