RnoINT0104353 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11021106-11021377:+
Coord C1 exon
chr3:11021106-11021179
Coord A exon
chr3:11021180-11021293
Coord C2 exon
chr3:11021294-11021377
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTTTTTTTTTTTTTGCAGGTA
3' ss Score
13.12
Exon sequences
Seq C1 exon
TTTTGACAGTGACCTTGAACACCTGCTAAAGACTACCATTGAATCTCACACCAAGCCTTCTCCTAGAGTGCCAG
Seq A exon
GTAAGTGCTGCCTCCCAGCACAGTTTGTGATCTAACCTGGCTTTTCAAAGCTAAATCTTAAGCATTTATGGGTTGGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAG
Seq C2 exon
GTAAACTGTCCCCTGCGAAACAGGCCCAACTGAGGAACTTCTTGGCCAAAAGGAAGACCCCACCAGTGAGGTCTACTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGACCTTGAACACCTG
R:
TGGAGCAGTAGACCTCACTGG
Band lengths:
154-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]