MmuINT0111936 @ mm10
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32011012-32011268:+
Coord C1 exon
chr2:32011012-32011085
Coord A exon
chr2:32011086-32011184
Coord C2 exon
chr2:32011185-32011268
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTGGTGAATTGTTTTGTAGGTA
3' ss Score
6.34
Exon sequences
Seq C1 exon
TTTTGACAGTGACCTTGAATGCCTGCTAAAAACTACCATTGAATCTCACACCAAGCCTTCTCCCAGAGTGCCAG
Seq A exon
GTGAGTGCTGCCCCCTAGCCTCCCAGCATAGTTTGTGATCTAACCTGGCTCATCAAAACTAAAGCTTAAGCATTTGTGGGTTGGTGAATTGTTTTGTAG
Seq C2 exon
GTAAATTGTCCCCGGCGAAACAGGCCCAACTGAGGAACTTCTTGGCCAAAAGGAAGACCCCACCAGTGAGGTCTACTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855:ENSMUST00000065398:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTGAATGCCTGCT
R:
TGGAGCAGTAGACCTCACTGG
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types