GgaINT0125191 @ galGal4
Intron Retention
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6110689-6113914:+
Coord C1 exon
chr17:6110689-6110797
Coord A exon
chr17:6110798-6113838
Coord C2 exon
chr17:6113839-6113914
Length
3041 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTTTAGTATTTCTTTTTCAGGTC
3' ss Score
10.25
Exon sequences
Seq C1 exon
CTGTGAGCACCTCCTTGACTGAATCAACTCTGAAGAACGTTCCCCAGGTGGTGAATGTGCGAGAACTCAAGACTGGTGCGTTGACTCCAGCTGTCTCTACAGTAATAGG
Seq A exon
GTGAGTGGAATCTCCCTTTTTTTTATGGTAGCCTTCACTAGTGCTTGCAATAGAGCACATCTACCAGTGTAGAGCCATAGTCTGACTTAATGTGAAGTGGTGAGTGTGTTTAGAAATGAGTCTTGTTTGTGGAATGAATGGAAAAAGTATTTTCTTTCCAGATCAGGACAAGCCATTAGTAAATCCTTGAGTGAACAAACAAGACCGATGTCATCATCCTCCATTTGTCTATGAAATGTGTTTTAATTCATTCTCTCCTGCATAAATCCAGTGGTTTTATTGTGAACACACACTTCGAATCTGAGATTTCCAGTTACTAATACTGTTTGGTCTCCTTCTACAATGGAAGTGCACCTCTGTTGCTGAGTGTGGTCTGTGGACTTAAGCTGTCTAAATGCTGTTTTTTCTACTTCCTTGTCAATTACAGAGGAAAACTCTGGGGTTATGCCTCTCCCATCTGTTTCCTGACTCACCCTCTGGGAGAGGTAGAACAGTACTTTTGCTTCTCTGAAAACTTGTCTTAAATTTCTTGACATCAGACTTCTGACTGAAGGGTGGGGTGTTGATCACTTTGGAAGAATACAGAGCTGTAAAGCTGTCATCCTCATAGGGAAACTATGAAGGTTGGCTTCTGGTACTTAACCTTGAATTTAAAATTTCTTCTGAGTTAGCTGTAACTCTTGACTTTCCTACTCTCTGCTGCCTAGAGACAACAGCTAGCTCAGCTCATTCCAGAGATTTCTGTCTTATCACCATGCTCTGTCACCAGCTGCAGAACTAGTCCCTTTCCCTCTGCTGGTAACGACCTTGAAACTATATTTGCTTGATGTTCCTACAAATGCTTAAGACCAAGATAATGTGTGGTCATTTCTAGGGTGGGGAGGCAAGGGCATTACTGAAAAGTCTGAGCAAAGTTGAGGTTACTGCATTTGTCATGGTGCCAAGGCATTAAAAACAGGATAAATCACCATGTACGTCTGATTATAAGTCCCTGTGGAGCTGCATGTTCTTTGTCCAGATAAGTGTGGACTACACATGCAGCTCTTGGGACAACTTCTGTTACATTATTTCTCATTTTCATACTTGTGTGTATACTCTTCATTGTCAAGGAAAAAAGTGAGATTCCTTTGGTGTACCTTTTCAAAAGGGAGCAGCCTTACGCTGATGGAGCTCAGCTTCACTGAAGGCTAGCCCAGGAGTTCTTCTGCATTTTAACTGGGAAAAAGTTTGAGAGCTTTTTACTAATATATTTTCTTCTAAATGCGATAAAACCAACAGCTCTGCTTGGGAAATTTTGCTAAAAGTAGCGTTGTCTGGAAAGAGTTCTTCACCTGCTATAAGAGGGTTGTCTTTAAGATTGGTTTAAGGAGATCTCCCGTCTTCATTCAATCAGTAATAAAAACAGCAGAGTAATGGCAGTACATAGACCAAGACACAAGTGAGTGACACGTATCTGAGATTGGTGTTCACTTGGACTGTAGCTAAAGACACATTTTACTTTGAAATAGTTTTAGATTGGCAGGATAGATTTGATCACTCCGATGTATGGAGCACCAGCTGGCTTGTCGTCTTGAAGGCTTTTTGCAGTCTCATTTATGACATCATAAAACAGTTCTAACAGTTAAACATAAAGCAGACTAACAGTTCTACCTGACTGAGCCTGCCAGTCAGATGGAGCACTGAAACAAAGCGCCTTCACCGAGCAAAATTGATTCATCAGTTTTTGCTTCTTCAGAGGTACTGTCTGTCTTTTGCCACCACAGCACGTTCTGCGGGTTGTTCAGCACTGATGATCTTTCAGTTGTTACCAGCTGTGCAGTGGTCTGTGTCTAGGTGTGGTGGTGGTTCCAGCCCACTTATTCGTATTTAGTTTTCAAACTGAAATCAAAACCAGCCTTTTCACTGTCAGAGGAGCTCTGGATTGAGTTGTCTTGTGACCTTTCTTGGAAAGAGGGCCCACCATATCTTGAGTATCACAGACTTTGCATTTCCTTCATTGTCCAGGGTTTGTGTGAACTTGAAATACATTGTTGCATGAATGTGTCCTCTGTCTTTGGAAGTGGGAAACTTCTGTCAGCCAGCATGTAGCTGATCAGTGCAGTGTGGGAGTTCTCATGCTTTTAACTTTTAGTGCTCAGATTCTCTTGCTGTCTGGAGTTAGCAGCATTGGCCCTTTCTGTACTACAGAGGTTGCTTATTGTGTTAGGGAATACCTGGCCTGTGTTGAGATGGAAAGACTCCGCTAGGGTAAGAGACTTAAGAGGATGCAATTAGGTGTTGAATTTGTTATGCTGCTGAAGGCTTTTAGCACTAACCATTAAAGCTGGTGAGCCACTTACTTGAGATGCTAAAACTAGATGTCTGTTCTCAAGCTATAGTGATTAGGGTATTTATGGCTCACAGCACATAGGATGCTTCACCTTGGAAGTAGCTGTCATTCTGCAGTAATTGTCTGTAGGCTCTACATGCAGTTTATTTCATGGTCAAAATTCCAAACCTATTTTGGAGAATATAGGTTAGCCTTATCACACTTCTTGTCATGACTTCATTAATTCTTATACTACACTTCAAAGACATGGAACACTTTCTTTTTTTTTCTTTCTGTAGCTTTGGCTCCTTGCTCAGCGTTTCTGAGGGTTGCATGTACTTACATGTACTTGTCTGGGCTCTGCACTATAAAGGAAGCTTCTTACTTTTGTTATCCACTAGGCATAAAATTGTAATCCCCTTACCTGCTGATTTTTTTCACCAGCTCCTTGTAAAGTAGAAAAGCTTGACTCTCTTTGGAGACAAGAGTGTGTGAAGAAGACTTGATCATTTAAGTCTAGGGCTTTAAACGCATTTGCAGACTTCCTTTGTTAAATGTGGATGATTCATTTAAGAGGTTTATTCCCTAATCAGATTTGTTCATTTGGAGTTGTGCTTGGAATCTTTTAATAATGGAGGTTATTCAAGTCTTCTGGAAGCTGTGCATTCTGAGGGACAAGCAAATCTACTTTTAGACTAGTCATTCATTTAATGTTTTAGTATTTCTTTTTCAG
Seq C2 exon
GTCATCAGTTCCTCACTCTGCAGCCCAGGCAGTCCACCAAGTTCTGGCAAGTGTTGCTACAAATCAGGCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830:ENSGALT00000006070:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]