MmuINT0111940 @ mm10
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32020258-32025318:+
Coord C1 exon
chr2:32020258-32020357
Coord A exon
chr2:32020358-32025242
Coord C2 exon
chr2:32025243-32025318
Length
4885 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGT
5' ss Score
7.48
3' ss Seq
GCAAACTCTCTCTCTTTCAGTTC
3' ss Score
9.95
Exon sequences
Seq C1 exon
CTATGAGCACTCTGACCGAATCAACTCTGAAGACTGTCCCTCAGGTGGTGAATGTACAGGAACTGAGGAGTAATCCCTCGCCCCCATCTGCGGCCATGGG
Seq A exon
GTATGTTACAGCTCTTCTCTGTACGCAGCCTGCAGTTGGCTGTCATGGACGCAGTTGGTCTGAAGGGAGCACTGCTGCCACAGCTTCTGTAGAGGCCTGGGCTATGGAGGGATGGGCAGCCATTACTAAGTTTTTAGGAAGGTGGACTTTCACCTTTCCAGGGCACCCACTATAAACTATAAGCCAGATGTGAATTTGGATAGACCCAGTTTATTAATGTTCTTCAGGTCCTGCTGACCACTGTAAAGATGGTGGGCCATGGAGAATGACAGTGCCCTCCCTGACTTCCTCTCTCCTAGCATTTCCACTCTTTACTTTTTTCTCATGAAGAAACAGTATTTGAGAAGCAAGCAGCTACACTTGCAGAACTTCTGCTTCTCTTCTGTGCTTATTTAGGCAAGATTCTTGCCAGAGCTCACTTGCGTTTGGTCTCCACCGGGGCTGGTATTGTGTGGTGCCCCCCTTATCCCACCCAGGGCTCATGTTGTGTGGTGCTCCCTCTCCATACACACTCGTACATTTCCTTTAGCAGCATTGTTCAAGTCCTACTCACTGTGCACAAAGTTTGAAGCCTCATAGTCTGTGGAGCAGCTAGCCTCCCTATGCTATCTGAAAGAGTTGGGAGACATTCTTTTGCCTTGAATGGGAGATCATCAGAGACTAGTATTTTTAGGGAACCCAATGTCTGGCGCCCATGGATAGTCAGTGGCAAGGTGAGCAACTACAGACCCTGTGTTTTCACACTGTATTCTTGTCCTCTAGTGACACTACAGAGCAGACCTACCTACCCAAGGCTTGTTTTCTTGAGTGGCCTTGCCATGCTGATGTTGGACTTTGCCTGTCTGTATGTTGGTCTATTTACCAACACTGCCTATTGTCAACATTTCTAGTTATCTCAGGGTCAAACCAAATTCGCCCTCTTTACTGTCCAGTAATAACTTGAAGCCTTCCTTGGAATGCCATTTGGACCAAGACTGGTATTTGTGGTTGCTGTGAACCCTTCAGAGAACTGTGCACTGGAGTTTGGGAACTATAGCAGATTCCCACTGGAGAGAAGGCGGGAGGCCACTGAAAGTCAGAGTGTTTTGCAAGGCCAGTCTTGTGGGTGCGGTGTGGGCAGGTACTTCTCAGACACTGACTACAGAAGAGAAGCACTTTTGCCTGCTCAGCTCACCTCCCTCATTCTGCTCATGCCTGATGGCAGGGCTTCCCTAGCTTTGCTCTGCAACACAACACAAATAGCCACCAACGGTGGAGGAAGTGTTTTTAAACCTTTTCTTTATCATCTTCTGTATGTATGGTGTGCTTGCATGAGTTTATGTGCACTATGCGCATGTAGGAGCCTGTGGAGTCCAGAAGAGAGTATTAGAACCCCTGGAACTGGAGTTAGCACTATCTTTGTGAGCCGCCCTACATGGGTGCTGGCAACTGAACCTAGATGGCCTACAGGAGCTCCTAACACTGGGCCATCAGAATCTGGTAACATGTTCTCTTCCTTTCTCCACAGAGTTGAACTCTCTGATACACTACTGAGCTTCAGCACCCAATACCTGAAGCAGTTTCCTTTTGTTTTCATTTTCTAGCTTTAAAATTGTTTCCTTTTTAAAGATTTATTTATTTTATGTATATGATGCTCTCTATCTGCATGAACACCTGCAGACTAGAAGAGGACATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTTCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGACAGTGCCCTTAACTGTTGAACCATCTTCCAGCCCCTTAAAATTGTTTTTAATTACATTTATTCCTGTTCATGTGCACACGTGTGCCAAGGCACATATGGAGATCAGAAGACAACTTAAAGGCATTGGTTCTCCTTCCAGCCTGTGGGTTCCAGCAATCAGGGTGGCTTGACACCTCACTAGCCCTTTTTTTAAGTAGACATTTATATAGCTGATAATCTTGAAAACAGTTCATAAGTGAAAATTGATACATTTCACCAACTTCCCCATGGGTGAGTTCATTGTCAAATGGCTGACTTTCAGGGCCTTGTAAGCAGCTATCTCTAAAGTCTATTAATTAATTTTGCACTTAACTATTCTTAGGTGACACCACACACATTCATTCTGCTCCCTGTGTGTTGTGGTTGTGAGACTGGCTTTTCTCTTTAACTGGAACAAATCCATAGCTGTTCATACTCCTGTATCGCTCCCTGCAGAGCATCTGCTGTGAGTGTGGTGCTTCCCTGGGGTGAAGGAGAAGTAGTTGTGAAGAAGGCCTTCATCCCTGTTGTCGCCACAGGGACCTCAGCCAGGAGGCCACCAGGCAACCAAATTCATTGGTTCTGCCTTGTCATATATGCATATTTATTAAAACATATTTGCTAATAATTAAGATTGTCCAAAAGAAGACCTAACTGTGTCTCTTGATTTAGGCCATGGAAGCAAGCTGTTGATCTAAGTGAAAGAATGAGTCCCTTTTCTTAAGCAGCAGCAGGCAGGATACTTACCATTGGTGGCCTAAGAAGTGCTGGAACGCCTCGCAGCAGCTCTGCTTCCATTGTGCAGTCTGATTGTGTCTACTGTGGTCCTGATTGTTGCTTCCCTTCTTAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCATACCTGTGTATGTGTGTATCACATGCCTGATGCCAGTATAGGCTATAAGAGGGCATGAGTTCCCTAGAGTTAGAGTTAGAGGTGATGGTGAGCTGACATGATGAGCTGGGATTTGGATGTGGTTCCTTTGCAAACACTCTTGCCACTGAGCCGATCTCCAGCCCGGTTGTTTAGTGGTTTTGTTTGTTTTTGATAAGAGTGTACAAGCAGTGTCACACCCATTTCACAGTCCTCTTGATACTCAAAATATAGCAGAGCTGAGCCTGGCTTTCCCTAATATTCTCATGAGCATTTGTGTGTTGGCCTCCTTCATTTGCCTGTGTTCCTACGCAGTCCTTTGCATACTCTCTCATGCGTGGACTATTTGCTGTTTGGCCCCTTTAGTCGAGGTAGAGCTTTCTTGTAGCTGGTTTATTGGTAGGTTCATTGGGTGCTTGTGCCAAACAGCGTTTCTCTACAGAGAGGTCACGTGGTATAGTGTGCTGGTTTGGTGCCTCCTGGTTTTGTGTTTGGGGATTCAGGATGCCCAGGAGACATGTGGCATTCTCACAAGTAAATAGAACAGTGACTGTACACAACTTTGCCTTCGTGATTTGATTACCATCATGTTGTCACTAAGGTTTAGCTACAAATATTTTCCATGGTTTGGATAAAATACTGTTTTTTAATGTTCATTTCTAGTTTTTATACAAGAGATTCATTTCCCTTGTGGTTCCCTGAGCTCAGACTGTTCTGTCAGCAAGTTGTCTAAATCCACTCTGGAATCTTGGGACCCAGCAGTCTTGCCAACACATTCTGGGTCTCTGGTGGAAGAGGGCAGGAACAGCCTGAGACCCCGAACTGTGGAGCGTCTCAGGGCATTCCTGTATCTTCATCTAGGGCACTCCTGCATCTTCCTTTGCTTTGGCACAATCATCGTGGGGGGTTTGTTTCATTGAGATTGAGTCTCTTTTCTTCTTCAGCCTAATCAAGTCTAGGAAGATTATATGATATCACACAGAATTTAGATAGACCATTGAGGACTAAACCATTTGCTGATTTCGTCTTTCAAAAGAAAAAAAAAATTTATTTATTTATTTATTTTTAGATCAGGTTTCTGTATAGCCCTGGCTGTCTTGGAACTCAGATAGAACAGGCTATCCATGAACTCAGAGATCTGCTGAACTCTGCCTCCCGAGTACCAGGATTAAAGGCATACACCACCACTGCCTGGCATCAAATTAATTTTTGATGGAAAGTTATTAATAATCTTCCCTCAAATCTGAAAAGAGTTCTAAGCTCCTACATCCCACAACTACAACTGCCACTATTCATTTCAGTTAAAGTAACTGCACTGGGGACAGAGAAATTGAAAAGCTTTTCCTAAATAATAAGAGCTTGTGTCTATGATAGAACTGACAGGTGGGTCTTCATATGCTACCACAAGGCAGGTAGTGAGACAGTGGTTCCCTAAGTGCAGCAGACGGGTTTAGTGAGAGCTTCCTTGGAAACTGGGGTGTGCCTTCGTTCCCAGAGTAGCCAAGCTGCAGGCTGGAAACAGCAGGTGTGTTGTGGAATCCACCCACAGCTGTGCCAGTCTGGGGCAGGGGCAGCACTTTTGCTATATGTGCAGCTCATCATTTATGCCTCACAGTTCCTGTTGAACATCTTTTTTTCAGGTTTGAAAAAGAATAGGAGGGGTTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTAAAAAAAAAAAAGAAAAAGAAAAAGTTTAGATGGAACTTCCGAACCATCTAAAACCAGGGAGAAAGGAAGGGGGAATGCCAGTTGTCCCAGTAAGAACAGCATCTATTTGGAAATGGTTATAAATTGTTTCAGGGAATTATAGATAGGTAGAAGAAAGTTAACAAGGTCATTGGCTTGCATTTTATATAATTGAAAACCCAGATTTCATTTAAAACTAATTCTTCAGCAAAATGTCTGTTGAGTGTGGGGTCCAAGACATCTGTATGCCGCCCCAAAGTCTTCTTATGTGTTGAGCAGGGAACTAGCTTGAGGTTGAACATATTTGCCCTCCGTAATGTCTCAGCAAACTCTCTCTCTTTCAG
Seq C2 exon
TTCTGCCGTGCAGCACTCAGCAGCCAAAACACCCCATGCTGTGTTAACCCCCGTGGCTAACAGCCAAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855:ENSMUST00000065398:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.915
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types