GgaINT0125235 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2054341-2055777:+
Coord C1 exon
chr17:2054341-2054509
Coord A exon
chr17:2054510-2055594
Coord C2 exon
chr17:2055595-2055777
Length
1085 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
GTGTATATAACTTCCTGTAGCTG
3' ss Score
5.97
Exon sequences
Seq C1 exon
TATCCATGAGTACCGCCTGACGAGCTGGCTGGGCCAGCAGGAGGACATCCACCGCATCGTCCTGTACCAGGCAGACAGCACCCTTACTCCGTGGACTCAACGCTGCATCAGGCAGGCTGACTGCATCTTGATAGTGGGACTGGGAGACCAGGAGCCCACTGTTGGAGAG
Seq A exon
GTGTGGAACAGCTTCTTCCCATGTTTGCAGTGTTAGCAGTCAACGGTGAAAAAAATGCTGTTTCACACAAGTGGATTTCTGGGGATTTAATACCCAGTGAAGCATAAATAGTGGATTTCTTGGGAATATTTCATAAGTAGAAGAATTAAATGAGAATTTTCTGAACTGACAAGCTTTATATAAAAGTACTTCCGGCAGAGTTCCAAGGAATCATTTTGGTCAGTGGTAAATCAAAGCCAAATCACACTGAAGCAATATGGCATCCATGGTTCTGTCCAGAATTTCTCTGCAGGATCTCCAGATAAGCCGATAAAATCTTTGGTACATTTAATGATGTATGTGTAGGGAAAGCTGTGTGTGAATTGTGTTGTATGAATAATTTGTTCTATTTCATTACAGACTGTAAGCCATTTTTTTTTTTCCTACGACCTATTTTTATCCTTAATATTTTATTGCTAAAGTGTGTTGATCAGGCACAAATTCTGCAGCAACTGGGGGGAAAAAAAATAGGACTATTAAGATTGTGAAGTGCTGAGTCTGACCTCCAGAGAACCTGGGACTGTTCCCATCTGCAGCATTCTTTTGTGTCTGGTGTTGGTTCATGTCAGCATGGGGGAGGCAGGAAGCACAGTAATGGGAACTCACCATCAGATGTCTGAAACAAAAAGTGAGAAGGGCAAGGAGAAAAAAGTGGCCTGATTGGATGTAAAAAAAAAAAACAAAGCATACTGAAAGCTTTCAGGCTCAGGTATGACTTGAGAAGCAATCTCATTCTGTGTGAACGGCATGCACCTGTGCTGGGCATCTAATGGTGTGTGTTCTAGGTAAAAATCACTGTGTTTTACATTCAGATTTAAATCCTTGTCCAATTTTAGAGTTTTCTTTGCCATATAAGCTCACAGCTATCAGCGTGGTTGACTAAATCCATCCTGTGTGTGCGTAGCAATCTGCACATTCAGATTAGGTGTCAGGCATGCATTTGCACGTGCATATATGTATTCCAAAATAGAGCATCTCATTAAGTTAACAGTGGAGCAGTACGTACCTGATACCTCCATTCCTTTGGTGTATATAACTTCCTGTAG
Seq C2 exon
CTGGAGAGGATGCTGGAGAACACAGCGGTCCGAGCCCAGAAGCAGCTGATTCTGCTCCATAAGGAGGATGGACCTCTCCCTTCCCGAACTGTGGAATGGCTCAATATGAGGAGCTGGTGTTCTGCTCATCTTCATCTCCACTGTCCACGAAGAGTGTTTTCCAAAAGAAGCTTGCCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGTACCGCCTGACG
R:
TGGCAAGCTTCTTTTGGAAAACA
Band lengths:
345-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]