MmuINT0123199 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25039603-25041128:+
Coord C1 exon
chr2:25039603-25039771
Coord A exon
chr2:25039772-25040945
Coord C2 exon
chr2:25040946-25041128
Length
1174 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGGCCCTTCTCTTCCCCTAGCTG
3' ss Score
8.06
Exon sequences
Seq C1 exon
CATCCATGAGTACCGGCTCTCCAGTTGGCTGGGCCAGCAGGAGGACATCCACCGGATTGTGCTGTATCAGGCAGACGGCACACTCACACCGTGGACCCAGCGCTGCATCCGGCAGGCTGACTGCATCCTCATCGTGGGCTTGGGTGAGCAAGAGCCAGCAGTAGGTGAG
Seq A exon
GTGAGTGCTCAGAGGGACTTCCATCTCCTGAACTATGTCCATCTTTGCTTTGGTTGAAATATTACTCAGAAGAGGACCCACATATCTACCACCCACTCTTTAGACGCTTTGCAGTATTCACTCTTAGAGATTATAGAGAAACAGAGGCCTATTTTATATCATTCTGAAATTTATTTTTGGGTGTTTTGGGACAGGGTTTCACTCTGTATCCCTGACTGTCCTGGAACTCACTATATAGACCAGGCTGGCCTCTGAACTCATAGAGATCCCTCTGCATCTGCCACCCAAGCGCTGGGATCAGAGGTGTGTGCCACCTCCACCCAGCATGAAATTTGCCTTTCCATCAGCAGGTAGGATTTTGATACAGACACCCTCCACCCCCCACCCCAGGTTTGGTCCATTTTGGTGGCTGTTGTTTTTCCGTTGTGAGCACTGCACCATCTGTGCTTGCAGCCTCTGCTGGTTACTTCACAGCACCGAATCCAGTGCCAGTTGTCTTCAGAGGCTTTCAGGCTGTTGACCCCAGAGGGTTTGTTTGCTCTTATTAGATTCGGCCAAGTGCTGAGCGGCTTGTTTTCAGTTTCCCTTTGTGAATGGCTGCAGGTATGGCTGAAAAGCCCCATGTCCTTCCCAGAAATGAAAACTCTGAGGAGCAATAAGTCTTCATTTTGATTAGTGTTCTCGTCTCCTCTCTGGTCTACCTGCTCAGCTCTCATTTCAGGCATCTCCTCTGCCTGTCTAATCTGGGAGCAGCCAAGTTCATCCCCTCTGGCGTGACCCCCCATTGTAGAGAAGCTGTGCTGTTTTGTAAGGGCAGTTCCCCAAAAGGTGTGCGTCATTTGTAAAGGTTGTAGCACACATTCATGAAGTAGTATTTGAGATACAGGACATGCTCCTGTCTCGTACTCCGAGCACCCTCACAGTCATGTTGGCCACCCAGCATTTACAGTTGAGTGGACCATGTGGTCAGAGTATTAGTAACCCCAAGATGGGCCGTCTTTATAGCCTAGCTACTAACTAGACCAATCACACACTGTCTTCTCTGGGGCCAGTCATCAGGGTATTGTTGAGTGTAGATCTTGGGGACAACTCTGTGATGGTCCTTGGTTCTATATATTGTGCTCAGTGCTCAGGCTTGCCTGAACTTGCTGACCAGGCCCTTCTCTTCCCCTAG
Seq C2 exon
CTGGAGCAGATGTTGGAGAGCACAGCTGTGCGTGCCCAGAAGCAGCTAATCTTGCTGCACAAAGAGGACGGTCCAGTGCCTTCCCGCACAGTGGAGTGGCTCAACATGCGAAGTTGGTGTTCTGGCCATTTGCACCTCTGCTGCCCACGCCGTGTCTTCTCCAAGAGAAGCTTGCCCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGTACCGGCTCTCC
R:
TTCTCTTGGAGAAGACACGGC
Band lengths:
337-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types