GgaINT0125235 @ galGal4
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1654672-1656108:+
Coord C1 exon
chr17:1654672-1654840
Coord A exon
chr17:1654841-1655925
Coord C2 exon
chr17:1655926-1656108
Length
1085 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
GTGTATATAACTTCCTGTAGCTG
3' ss Score
5.97
Exon sequences
Seq C1 exon
TATCCATGAGTACCGCCTGACGAGCTGGCTGGGCCAGCAGGAGGACATCCACCGCATCGTCCTGTACCAGGCAGACAGCACCCTTACTCCGTGGACTCAACGCTGCATCAGGCAGGCTGACTGCATCTTGATAGTGGGACTGGGAGACCAGGAGCCCACTGTTGGAGAG
Seq A exon
GTGTGGAACAGCTTCTTCCCATGTTTGCAGTGTTAGCAGTCAACGGTGAAAAAAATGCTGTTTCACACAAGTGGATTTCTGGGGATTTAATACCCAGTGAAGCATAAATAGTGGATTTCTTGGGAATATTTCATAAGTAGAAGAATTAAATGAGAATTTTCTGAACTGACAAGCTTTATATAAAAGTACTTCCGGCAGAGTTCCAAGGAATCATTTTGGTCAGTGGTAAATCAAAGCCAAATCACACTGAAGCAATATGGCATCCATGGTTCTGTCCAGAATTTCTCTGCAGGATCTCCAGATAAGCCGATAAAATCTTTGGTACATTTAATGATGTATGTGTAGGGAAAGCTGTGTGTGAATTGTGTTGTATGAATAATTTGTTCTATTTCATTACAGACTGTAAGCCATTTTTTTTTTTCCTACGACCTATTTTTATCCTTAATATTTTATTGCTAAAGTGTGTTGATCAGGCACAAATTCTGCAGCAACTGGGGGGAAAAAAAATAGGACTATTAAGATTGTGAAGTGCTGAGTCTGACCTCCAGAGAACCTGGGACTGTTCCCATCTGCAGCATTCTTTTGTGTCTGGTGTTGGTTCATGTCAGCATGGGGGAGGCAGGAAGCACAGTAATGGGAACTCACCATCAGATGTCTGAAACAAAAAGTGAGAAGGGCAAGGAGAAAAAAGTGGCCTGATTGGATGTAAAAAAAAAAAACAAAGCATACTGAAAGCTTTCAGGCTCAGGTATGACTTGAGAAGCAATCTCATTCTGTGTGAACGGCATGCACCTGTGCTGGGCATCTAATGGTGTGTGTTCTAGGTAAAAATCACTGTGTTTTACATTCAGATTTAAATCCTTGTCCAATTTTAGAGTTTTCTTTGCCATATAAGCTCACAGCTATCAGCGTGGTTGACTAAATCCATCCTGTGTGTGCGTAGCAATCTGCACATTCAGATTAGGTGTCAGGCATGCATTTGCACGTGCATATATGTATTCCAAAATAGAGCATCTCATTAAGTTAACAGTGGAGCAGTACGTACCTGATACCTCCATTCCTTTGGTGTATATAACTTCCTGTAG
Seq C2 exon
CTGGAGAGGATGCTGGAGAACACAGCGGTCCGAGCCCAGAAGCAGCTGATTCTGCTCCATAAGGAGGATGGACCTCTCCCTTCCCGAACTGTGGAATGGCTCAATATGAGGAGCTGGTGTTCTGCTCATCTTCATCTCCACTGTCCACGAAGAGTGTTTTCCAAAAGAAGCTTGCCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000040268:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGTACCGCCTGACG
R:
TGGCAAGCTTCTTTTGGAAAACA
Band lengths:
345-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]