RnoINT0114532 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2248396-2249784:+
Coord C1 exon
chr3:2248396-2248564
Coord A exon
chr3:2248565-2249601
Coord C2 exon
chr3:2249602-2249784
Length
1037 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CAGGCCCCACTCTCCCCCAGCTG
3' ss Score
5.94
Exon sequences
Seq C1 exon
CATCCATGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACATCCACCGGATTGTGCTGTATCAAGCAGACAGCACACTCACACCCTGGACCCAGCGCTGCATTCGTCAGGCTGACTGCATCCTCATCGTGGGCTTGGGCGATCAGGAGCCCGCACTGGGTGAG
Seq A exon
GTGAGTGTTCAGAGGGACTTGCATTCCCGGAACCCTGTTCATCTTCCCTCTGGTTAAAATGGTACTCAGAAGGGGACCCACACGTCTCCCACCCACCCTTCGGATGCCTTTGCCGTATTCACCCCTAGAGATTGGACACAAACAGGGGTCTGTTTTATATCATTCTGAAATTACTTTTTGGTGTTTTGGGACATGGTTTTGCTCTGTAGCCCTGGCTGTCCGAGAACTCACTCTGTAGACCAGGCTGGCCTCTGAACTCATAGAGATCCTCCTGCCTCTGCCACCCAAGTTCTGGGATCCACGGTGTGTGCCACCTCCACCCGGCATGAAATTTGCTTTTTCGTCAACAGTAGGATTTGCACACAGGTCCTACCGCTTGGTCCGTTTTGCCGACTGTTAATTTTTCCATTTGTGAGCGCCCCACCATGTGTCTCTGCCATCTTCTGCCAGTTCCTTCATGGTAACGAGCTAGGCGCAAGTTGTCTCCAGAGGCTTTCGAGTTCTTGACCCCAGGGGTTTACTTGTCCCTACCAAACGCCGCCAAAGTGCTGTGCTGCTTGTTTTCACGGTTTTCCTTTGTGGGTGGCTGCAAGCATGGCCGTGTCCTTCCCAGAGAAGAAAGCTCTGAGAAGCAATACGTCTTCATTTTAGTTAGTGTTGTTCCCGTCTCCTCTCTGGTCTACCTGCAGCTCTCATTTCAGTAAGGGCCATTCCCCAGAAGGTGTGCACCACTTGTGAGGGTCGGAGCACACATTCACAAAGTAGTGTTTGAGACACAGGACACACTCCTGTCTCGTACCCCGAGTGCCCTTACAGCCATATTGGCCACCCAGCATACACAGTTGAGTGGAGCATGTGGTCAGGGTATTAGCAACCCCAACGCCCATTCTACACTGCCCTCTCTGGGTCTGGGTCCAGCCATCAGGGAAGTATCGAGTGTAGATCTCGGGGACAGCTCTGTGAATGTCCTTGGTTCTGAACTGTGCTCAGTGCTCAGACCTGCCTGGACTTGCTGACCAGGCCCCACTCTCCCCCAG
Seq C2 exon
CTGGAGCAGATGTTGGAGAGCACAGCCGTGCGTGCCCAGAAGCAACTGATCTTGCTGCACAAGGAGGAGGGCCCAGCACCCTCCCGCACAGTGGAGTGGCTCAACATGCGCAGTTGGTGTTCTGGCCATTTGCACCTCTGCTGCCCGCGTCGTGTCTTCTCTAAGAGGAGCCTGCCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGAGTACCGGCTGTC
R:
GGGCAGGCTCCTCTTAGAGAA
Band lengths:
346-1383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]