GgaINT0125251 @ galGal4
Intron Retention
Gene
ENSGALG00000003683 | MED27
Description
mediator of RNA polymerase II transcription subunit 27 [Source:RefSeq peptide;Acc:NP_001264204]
Coordinates
chr17:6347652-6354245:-
Coord C1 exon
chr17:6354138-6354245
Coord A exon
chr17:6347694-6354137
Coord C2 exon
chr17:6347652-6347693
Length
6444 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTTTGTTTTTCCTATTGCAGCTT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GTTACCTTAGGAAAAGTGTTAAAAGTGATAGTGGTGATGCGGAGCCTCTTCATTGACCGGACCATAGTAAAAGGATACAATGAAAACGTCTATACTGACGATGGCAAG
Seq A exon
GTAGGTTATTGTGTATCCAGCAACCATCAATTTTATTTTTAGCTGATATTTAAATGTCAGAGAAAAGGAATCCCATCACAAGTATGCTGGGATCACAGAACTGTCAGAAGGGTTTGTGGATGTTTTGCAGGGTTTAAATTTATCATGCTTTCCTTGGATTTTTCATACCCGAATGTCTGACTTTTTTCTAAGCTCTGATGCTCTTGCTTGAATTTCTAATTTATCACCTTAGACCCCCAGTTGCCTCATTAATAGTGTCTACTGAGAAAACATTTTTTCAGTGTAGCAGCACATCAATAGCCCAAGGTTCAGTTTTCTCTTTCCTGAGAGCTTTTGGGAAATCTTGGACTAGCTTTGTGTTCAACTTGATAAGCTCAGCCATGAGAATCACTGCTAGGTAGGTAGTCCTCAGTAATTTCCTTGTCAGTATTAGCTTATCTTGAACAGCAGCTACTAAAGGCGAGTGTTCCCTGTTTCCACGAGGGTTTTGGTTCATCAGCCATTCACCCTGCTTGAACCCTTGCATTTCTCCTGACTGCATGCACTCCAGAGGGCCGCCTGCAGCCCAAGTTGGGGACAGGAGCTGACACCCCTTGGCTCAGGTTGTTCCTGCTTTCAGGGTGGAGTGGTCTCTGTTACTGAGATAGCAGGACACTCCTGTGCCAGAAACAGCACTAAATGCCTCCATGTTGCACATTTTCTCTCTGGAGCTTTCTCTTCTGATTATGAAGCCTATTAAAATACAAAGTTCATTATATCAAGATGAGTACTTGGCACCCATAGGCCATGTTATAATGAGGTGAGACTTTTTTCCTTTCAGAAGTGATAACTGTGTTTCAGTGCACAGCAGCACGCTGTGTACTGACCCAGGGTTCAGCGGCTCCAGTCTGAACCTCTGTTCCCCAGAAAGGGCCAGGAGCAGATCTGCCAAAGAGCGTAACACAGCTATATTTCCCAGATGAGAGATTCTCACTTGAAGGGTGGGGGATTGGCCTAGGGAACAGTAAAATAAAAACTGACCGATTTTTGATTTGCATTGCTCAGATCTACGGGTTTAAACACTGCTTTGCAGAAGAAGCAGTTGCACCTCGCTCTGACTTTATCAGCATATAAATGTAGACTAAGGCATCAGCCCCTCTTCACCCCAAGTTCTGCAGGGAAGTGAAGAAATAACCTAAAAAGCACTGACACTGCTTGATGGTTTCCCATGCCACATTTCATGTGGGTGTGCTCATTTTCTCCGATGAATCCAGTTTCCTTCAAGGCTCCCTTGAAATATAATTATGCTGTATGTGCTGAAAAGATGAGTAAAAGTTCCTTTGCAAAACTCAGCATCTGGCGTGGAGCTTCTGTCTCGCTCCAGGTTAGCTCTCAGGAGAGCTGTGTTCCTCCACTGTTGTCATCTGAGAGCGGTTCTCACCACGGCTGGCTTTAGGCACGGGGCAGTAACCTTTGTCTGTGTCCATGGGGAGCAGTTAGCTCCTCCTGAGCAGCCCTGCTAACACCTGCTTCGCTTGAAGCAGTCTGCAGGGGAGGCTGTTCGCTACCAACTTACATTTCAGCATCCTAAGCGGGGCGATGTGACTGCTCCCACGACGCTGAATGAACCCATGTCCGTACCGTGGCGGTTGCTATTCCATTGGGCCATCTCAAGGCTGGAGCAAAGCTCAAGGTCTGCATTTTAGGTATAAATAGGAACATTTCGTCTGACTTCGGTAGAACTGGAGTTGCAGCCACTTAAATCATGAGTAAATTTGGCTTGGAAGATTGAATAAATGCGTAGCTTGCTAGTTTTGCCAACTGGAGCACATATTGACAAACAGTGGGCTCCCTTTTTTTCCACTAATTAACTACACTGGTAATTGGAGTATAAGAATAAGATAGTGCTCTTGCAATGATTCGCTTTACTTTATTGTGCCTGCTGGGAATGAGTGATTACAGTCAATTGCAAACACAGTCCATTCCAATTCCTTCTCTGTCACAACAGCTGCCGTAGGGGAAGTGCTCCACTGTTCTAGCTTCTCAGTTTCCAGCCTGGGGCTGGGAGGGAAGCAGTAGCACTCAGAGACTCAGAAAGGTATGAAGGAGATCAGTGAGTATCCTCTTTGTTAGATAATAAAAGTACAGAGAAGCTTTGGGGTCGCTGTAGGGGGTGATTGCAGTTTGCACAGTACTTGCTGATTTGGGGGTTTGCTTATGTATTTCTAGGGAGTGTTTAATATTTGTAAACAGCAAGGATGAGATTAATTAAAAAGGCATCATACAATATGGCAATTCTGAAGCTCCTCTGTTTTCTGTAAGTCATGCTGAAGAAAGGACTAAGTCACAGTGGAATAAGTCATAGCATCCTTGCTCTTCTCTACACACAGATAGCTGAGTGGTGGTCTTCTGAGTAAGCCTCCTAAGCCCACGTATCAAAAGGTCCTTTAAGTAACAAAAGTGAGATTCTCTGGGGGGATTCCTCAAAAGGGCAAGGTTTGGGGCAATGCAATGTATTCAGCACTATCCAACAAAAGAAGAAATGGCCATCACTGGGAAAGTGAATGATGGCACAGGCAGTAAGTGGAACATGCCTTGTGAGGCACGGAAGAGGAAAGCACAAATGGTTTAGCAAATTTTGTATTTCTGGAAAGAGAAGGGAGAGAGCAAACAGGAGAGGTATTGATGTCCTCTGGTGCATTAGGCAGGCAGATCTAGAAATAAAACAAACATGGGTGTCTCTCAGAGCTGGAGCTGCGCGTGGCAGCGTGCTGAGGCACAGCTAGCAGGTACACAGGAGAGCTGACGTTGCATTATGCAGGTTGCTGTGGGTTGCTGCTCACTTAGACGTCGCACTGTCTGCACTGACAGGAGCTTATGTGAAGGCTTCCCGTGGTTTCTGCTGTACTCAAGTCTAGTTAAATTGGTTGCTCTCTCCTACAGACTTAAATACTTTCAAAATGAAGGTGAAAAAAATGAAAAGTAGTGTTAAGCTTTCCATGGGTAAAATAGGAGACTGCACTTTGGCGTTTTATTTTTGAGCTTTGCTTATATAGACAAAGCATCAGTGTGTTTCTTAAGTGCTTCATGTACTTCTCTCGTGAATTATTCACAAACCCTGCAGAATGTGTCTTTGCCAGGTTGCCAGCTGCATAACTTAGACATTTTTGGTGACACTTTGCAAAAACAATAGGTGAGATCTGGCAGCGCTGTCATGCAGCCGGCTCTGTGTGCTGACTGCTCTGCCGCTCTCCTGCTTACTGTACCAGCCCATTACGTCCACCCCATACTGATGCGTTTTAATTAGCCCTGTAGCTTCAGCGATGGCACCGTGCCACCTTCGATTTCAAACTCTGACATACTCATTGTGCACTGGAATTTAACCATGGATAGTAATTAATTACTAATGTTGTCCCGATTCCTGAATAAATGAAGCTGTGCAGCTCGCTCTTGCAGGGCAGGCTGATCATCAGCTGAACCATTAGTTAACCCAGTCTGCCAATAAAAATAGAGATGCATCGGGATTCTGCTGGCACGGTAGGTAGGTAACACCCTGCTTCTCTTTGGATTCAGACACCACGAAGCACCATGGCAGGGCGCATTTGGAGTGGATACTTAACATCCCTGCCTAGCCAAACTCTGATTTCTGCATCCGTTCAACTTAACTAAAGAAACATAAGTGTCTCTGTTGAATTATCATGTTAAGGAACTGGGGTTATGTTAATGCTGCGGCTTCATTAATTACCCCATATCAATAAGAAAAGGCAGCTTTTAGCCTCCTAGCGTAAGAGAGGAAAAGAAATGGTAGTATCAAAGGAAAGCTTCAAAGACAGCCGGAGCTGTCTCTCGGGTAATTTCTGATCCCCGTATTCTTTCCACTTCAAAGCTGGATGTGTGTGTGTTTGGGCAAAGGGGGGGTTGAATCCGATTTCTCTAATAAGTGTTGGCACCGGACCTGTTTGATATTAGATGCAGGGAACATTCTGATTTGTTATCGCCTTTGAAATCGTTCAGATGACCTTCAGAAAATGGCCTCTCGTTACTTATGCTGGGGGTGGGTGGGGAGAACGGGGTGCTGGGAAAAAAAGCCCCAGTTTAATTCACATGCAGAGGATGCCCTGGAATTGTGCTTTCAGCAGTTTTTTAGTTACAAATGTGTGTCTTGATTGAAAGTGAAAAGTTGAAGAATAATAGACCTGTAACGATGCATTCTTTAATCCGCCTCTGCCTTCATCCTCTGGCTGGGGGGAAAGGTGGTCAGTCGTGTAGGATTTCTGCATGTGCTCTGGGGAGGGGCTGGTGGCTCTTTTTTTTTCCCTTTTTTTTCCTTTTTCGACGTGGCTGCCATCACACCTAAGAGACTTCCATTACTTTTGCAGCTCTCCAATCTCCTTGTCAGCTAATGAACATTTCAGAACCTGTTGGACTCATCTTGATGCACCATCTGAAGTGGACTTTTTTCTTACATTTTTTTTAGATCTCGAATCTACCCAGAGAGGATCACCCACTGGGTGTGATCGCTGGAGATTAGCAAAACCGTGTATATATGTTCCAATTATAGCAACTCCGGCTGCTTTTGAAGCAAGCCCAAACTTACACAAAAACAGCTTAAAAAATCCGTATTAATATTTTATTTCCAAGTGTAGACTTTTCTAATATGGAAATGCAATGCTTCCTTCCCCACAGGCATAGGTACACTGTGCACAGAATCGTGCGTGGCTCCAAGTCCCAGCTGGGCTGCTGCTCGTAGGAGCGGTGTCGGTGTTCAGGTTCTTGAACCTGCCTTAAGAGCCATGAGTGTAAAGTTTTGAAGGTAATGTGCCTTAGGGTACTTCTGCCTTCGGCTGACCTGGAAAAGGCATCGAGGCGTCAGCTGCCTTCTGTCTCACGGCAAGGTCAGCACTACTAAGCCACGACACGTCCATCCAGAAGTGATGTTAAAATCTTTAACATCATCACCCGTCCAGGCTGAGGTTTGGAGACTCAGGAGTCACTTCTGTGCCACTGTTCTGAAGGCAGCCACATAACAGCTTTAGGCTTAAAGGGATGGGGACTGGTAGCATTCTCAGCCATTTTACCTATGTGCATTCATTACGGCACATAGTAATGTGTGTTTTCCCTCCTGTGTGTTTGACGCACATGCTGGGACTTCTTCCATTTCAGGCTCTAACCTGGGTGCCTTTCAGAAGGCTTGTCATTCCAGCTGCGGCTTGTGAGCACTACTGCAAGTCAGATTAAGATAACTGGCTACACTTTGTAATAAAGGAGGTGAATGCAGCACGGAGTCCCTTCCTTTAAATCCATTTCTTTAAAGGTGTAAACCTGGCAGAGTGTGTTTAGTACCACACTCTATTTATTCTCAGAACTGCACGTTTAGCTTGAGATCTCTTATTTACATTTTTAGCATCGTTTGCCATATTTTAATAAAATGGGTGTATTATACAATTAATGGAACGACTAAGTAATGTAATGCAGGTTTTATGTGTGCATTTAAATACATTTCTCTGAGAAAGCCAGAGCCACTGTATGTGTTTATTTCTCCACAATTAAAGGTGAATTTGCAAGCGAGGGCATGCCGTGTGATCCAGGGGATTTTGTGCACTTTAGAAGAAACCTGGCACTAATGAGTGAAGCTGATGGCTTTTCTTATCCTAGTGGCTGAGTATAGTGGGATCTATAAGACAAAAGTGATTTGCAAGTCAGGGGTTGAAGGAAATTCTCCTTTTCCTTTTTTTTTCTTCTTCCCTGCTGCTTTTCTGTGACAGAGTACAAGATATTCCACGGGGCTGGGCTAAAGAGCACTGGCACATCACTTAGAGCTGTCTGACGTGCGAGCCATTTGGTTGTTTAACAAGGGCAGCATTACCTTCTGCTTTCTGGGGTTACTAACATTTATTTCCTATCCGGCTGAGCCCACGCTTATGTCATGGATGTGTGCAGTTATCTACAGCCAGTGTGATTTTTGTCTGCGGATGTAAATGCAGTTTCCTAAGGGATGCTTTATTTAGCCCCAGAAGAGCAGTGCTTTGGCTTAATTCAGCTAAACGTTCTTTGTGTCATTTGTAACTGAATCACTTACTCAGACACAAGACAAGCAGCAACTTAGTAAGAATGCCCTCATTTTAGAAACAGACCAAAGCTGATGAATATTTGTGCAGATCAGCCGCAGCCTCAGACAGATGAGCATTTTTTAAAGGGAACACATTAATTCAACAGATCTCGTACGTATTTTCCTATTGAAACTGTAATGAACTGTGTTCCTTTTTCACTGCAAAACAAATTAACTCTGATGTCATTATTTCCCTTTATCAAATTGCAGCAGATACGGTTGATGGGTCAAAGTAGTGAACTGAGAAGTAAGGCTCCGTAGCTCACTTTGCCTGTGCTTTGAGTTGAACAGCTGCTTCCATTCTTGATCATGGTAATCACATGTAGTAACATATAACTTTGTTTTTCCTATTGCAG
Seq C2 exon
CTTGACATATGGTCCAAATCCAACTATCAGGTGTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003683:ENSGALT00000005834:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
NA
C2:
PF115713=Med27=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]