HsaINT0101657 @ hg19
Intron Retention
Gene
ENSG00000160563 | MED27
Description
mediator complex subunit 27 [Source:HGNC Symbol;Acc:2377]
Coordinates
chr9:134759445-134769379:-
Coord C1 exon
chr9:134769272-134769379
Coord A exon
chr9:134759487-134769271
Coord C2 exon
chr9:134759445-134759486
Length
9785 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTCTCTCCTTTCCCCTCAGCTT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGACCTTGGGAAAGGTGTTGAAAGTGATCGTCGTCATGCGGAGCCTGTTCATTGATCGAACAATAGTAAAGGGATATAACGAGAATGTCTACACAGAAGATGGCAAG
Seq A exon
GTAAGCATTGTGCAGTCTTGTGTGTTCCTTGGTTTTCTGTATCCCAGAACAAGTGTAGTCGAATTCCAGATGAATGGCATTAAAAACTAGCAATCATAGCGGAAATGATCAGCAAACATAGATTTGTCAGTGTGAGGATGCACACTTTGTGAAAAAACATTTCATTCTCTCTGCTTGCATTCTCCATCAAGCTTCTGCTTTTTCCTCTAAGCCTGATGCCCTTAGTTGAATTTCTAATTTATCACCTTAGACCCCAGTTGCCTCATTAAATGTGTCTTCTGAGGAAATGGATTTTTTTCCCCAAGTCAAGCAGCTCCTCAGTAGCCCAAGGTTCAGCATTTTGCTTTTCCTAGAACCACGAGGAAAATTCCCATTCATTTGACACAACCTGATGACACTCTTTTTCCACAAAACTAACAAGTCGCCCTTAGGAAGTGGCTGTGCACAGCAGCATATATTGAATACTGCTGTTGAAAGAAGACGTGTTATTTCCACGGGTGACTTGTTTCATGGAAAGTTCACCCTTGTGAACCCCTAATTCCTTTTGACTGCACAGTCTCCATATGGCTCCACAGAGAGCATCAGAGGATGCTGATGGGAGCTGACAGCCTTCATTTGTGTTTGCACCAGAGTGTAATGAACACCGTGCCTGAGATGCCCCACACTCTTCCAGGCCACTCTCAGCACGGAGCCTGGTCTCCCCACCCCATCGGGAGCCTTTCCTTCCTCATGACTCTCATTAAAATGTAAAAGTTTGTTAGTATGAATACTAGCACTCACCACCCAACAGCCACATTATAATGAGAATAGAATGTTCTTCAAAAAAAGGTGGTAACTGTGGCTTAGCACATAGCAGGGCGTTACATAAGAAGCACAGCCCGTGATATAATGAGATGTGTGTTTTGAACAAGTAACCCAGCATTTCCACATTCCACACAAGTGTTGTCTACGTGGGATGCAACTCCTGCTCCAAGGACTGTGCCCAGTTCTCGTAAATTTCCTCGTTGATACCAAATCATTCATTGAGGGGAGATTTCCTTTTTCTTTTTGGAAAAACCAAATGTCTTTGGAGCATGCATGTAAAGTGAGTAATCAGTCAGGTGTAGTCTGTGCGTCTGATTTGTAAACTCTGACAGCTGCTCCAGAAGGTTCCACACTGTTGGTCAGCAGGAGAGGCAGCACTGAGGGTAGTGTATACCCTCGCAGAGACCATGGGCAGTGGCATTTTGAGATGCCATTCTTGTTGGGTTTTTTCAAAGTTGACAACTTCATAGTCACTCCTGGTACAAAACATAGCCCTTGCTTGCCAAGGACTTACAAACGAATTGGAGAGTTGAAGAACAAATACGTAGAAAGGTGAGTCATAATCAGGACCGTGCTACTAGAGTTACCAAACTTAGGGTGCAAATGAAGCATGCTCTGAATTGAGATCATAAGAAGGAGTGGAAATTTACCTACTTTGCATGATACCTTTAACACTCTATTTAATTGCCCCTTACTGAAAGTGTCTGAAGTAGTACACATAAAGCACTTGGCACTTTGCCATCTAGTCAATACTCAGTAAATGATAACTAGTATTATTTTTATTCTAACTTAAAATAACAGTCTTGAAATATAGAGTCTCAGAGGTATGGTGCTTCCAAAACACCTCTGATCGCCCCTCCTCAGCTGCTCCAGTTACTTCCTTCTTTCTTGTCTTCCCCCTTGACTTCCCAGTTTCCCAGAGTTTTCTTCTCCCTCTGCGCATTCTCTTTGGCCATTCTCATCCATGTCACCCACACAAGGATCACTCATGATTTGTTTCTAGATCAGACTTCCCGTGTTCCTCAAGTTTAGCCTGTCTAAAACAAAACTCATCATCTCTCTCCCTACACTCAGTTTCCCTCCTCTTTTCCTTATCTTGGTTAACAGTACCCCCACCTAATTGGTTAAAGCTTTCTTCCCTTCATCCCGCCGGTCTAGGCTGTCAGTGATTACTGGCAGTTCTCCCTCTTAAGTAACTCTCAAACTGGGCCCCCCATCCCTCTCCACCCCTCTCGCTCCTCTCCGGCTCTCATTATCTCTGCACTGAAGAATGCACGCACCGCCTCACTTCTAGTCTCCAGTCTTGCTTCCCTCACAGTCTGTCCTTCACTTGGCTTCCAGAGCTGTCTTCCTAAAATACACATGCGAGCGGATGATTCTCTTTCTTTTTGCCATCTCCCCCTTGCCCAAAGCAGCCCTCCCCAAAGTAGGAAAGTAGGATATTAATAGATGTTAGGCAGAAAGCAATGCATGGTCAAACAAGTTTGAGAAACTCTGGGTTAGAGAAAGTTCAGTGGGTTTCTTTACTGTGGAAACCAGTTTGCTGATGTGCCTTATGAATATCTTACAGGGAGTAGAGAGTATGCAATATTTTCCTAACTTATTTGGCCACCAAATTCTTTTTATCTTCTTTTATTCTTAGAGCATATTGTGACATTGCCATTTTGTAGAATATACTTCTGAAAACTCTGGCTTGTAGCATAAAATCCAGACTCCTCTGCAAGGCGTCTAAATGCCTCATGGCGCAGCCTCTGCCTTCCTTTCTGACTTCATCTGGCATCATTCTCTACACACACCTCATCTTATCTCCAGCCGCGTGCTCCCTGTAGCTTCCATGACATGCCAGACTCTTTCACGTATTTGCACGTTTTGTGCCTTTTGCCCTGGGATCCCTCCTAGTCCAGCTGACAAAGTTTTACTCTTCCCTTTACAGTGGCTGAATGCCATCTTCCTTCCCATCCTGTCTCCATTTTCCCAAGAGCCTCTTTGCTTATGAACATGGGCTCTAGAGATGGCCGACCTGGGTTTGCCTCTCCTTACAGCACAGAGTTATCATCATTATCCATACACCCATAGAATTCAGAACAATCTTTTCCTAGTACTAGAATTGGTGCATCATGATTATTTACATGTCCATCTTGCAATTAATAAAAATACTAACAATACTAACATACGTTGGTCAGGCAGGCACTGCACAAAGCGAACTTTGCCCACGGTGGCTGTCGAATCCTCCTCACAGCATCATGAGACAGGTGCTGCTCTTAGACTCATCTTACACATGGAGAAACTGAGACCTAGAATGGTAACGTTGCCCACAGCCACACAGGGCTGGATCTCAATCCTGCATCTACCAGGAGCTCCTCAAGGGCACAGGCTCCATCGTGTGACTGTCTGTCTGTAGGGTGCACTTCTGTGCCAGGAGCACGGTAGGAGCCCAGTCCTGTCTGGGAGGAGATGATGAAAAAGCCTACTTGGGATATGAAAATGCTTAAGCTGGAATGGAAAGTGGAGAATCAAAAATGAGAAATGGGGACTAAAAGGAGCGGCAGTAATTGAAGTTGTAAATAAGTCAGAGGATAAAGGAGACACACGAGTAAAGGGAGACCTCAGGCCCTCCTGATGAGAGATTAGCCCGGCCTCTCTCTTTCTCCGAAGGAAAATGGCTGTACATTTGGGACCCTGGTTGACATCAGAAATGTGGTTGGACAGGAAGCCTTGCGTCCCCCTTTACAACTGTATGCGTTGGCCCAAGCAGTGCTTAAGCAGGGACCCTAAAAGTGGAAATTGCAAGACCGAGAGAACCAGGCCTCTTTGTTATTTTAAGGACACACTGACCACATTTGGCAGAGAAGCTCTCAAATGACTGTTCCACTCAGAATCTCATCCTAGCCAATTTGATTAGCCCCTTTTTTTCAGAGCACTTCACAAATGATAAAAATAAACCATGCAGACATTATTAGTGCTCTATTTTGAGTACTCTGTGTGTGTGTACTTTATTTATATACAATCTAGGCATTAGTGCAATTAATGTGTTGAATTGTCTGGCACATCCCAAATGAAATGTGGCGTCTGGAAGGAGCCCTTGGGGCCTGACATGTGTTCTACAAGAGCACGTTGTTGCTGGAGACGTCGCTGCTCCCGGGACGCAGCCTGCGTTTGCTGAGTTGGTGCCTAGGTGGCTGCAGGGGGGTGTTTTGCTGCAGTCTCCTGGAGCACAGCCACAGAGGCCCTGGGTGTGGCTCAGGAAGCCTCCTATGGGCTTAACTTCTGCCTCTGCGGTTGTCTCTGTCCTCCAAGCCCAAAGCAACCAGCACATTCGAAAGTTTCATTATCCTTCTTGCTGCTGTAGTGGCCCAGCACCACCCCTAATTTCCAGACCTTGCAGGTTTTTTCCCCATCAGAATCCAGCCCAGCAAGGCTATCACTTTGCACTTTGCACTTTGCTCTAACAACCACCGCCATGACCCTAGCATCCTGTCTCTTTACCTGCAATGCATATTTTTGATACCAAGGACCAATAGCCTGATTCCTCTAATAAAATAAAAATGCTTTTCAGACTTACCAACCACTTATTCATTGTACTCAGGGAGTAGCAAGAGCCACGACTCAGCATGTTAAAAGGCAGGATTGAAGATGAATACCTGGCCATTGTCCTGATTTTATACCAGTCAGACTTAACTGAAAAAAAAATGTGTCTCGTTCGAATTTAACTTTTTGGGGGATTTAGGTTATGTTAATGCTATAGCTTCATTAATTACCCCATATCAATAAAAAAGGCAGCTTTTAGCCTCCGAGCATAAGAGAGGAAAAGAAATGGTGGTATCAAAGGAAACCTTCAAAGACAGCCAGAGCTGTCTCCAGGGTAATTTCTGATCCCTGCATTCTTCCCACTTCAAAGTTGGCTGTGTGTGTGCATGTGGGTCGAGGGGGTGGGGAGCTGAATCTGATTTCTCTAATAAGTGTTGGCATCAGCCCTGTTTGATATCAGATGCAGGGAACATTTTGATTTGTTATAGCCTTTGAAATTGTTCAGATGACCTTCAGAAAAATGGCCTCTTGTTACTTCTAGGGGGAAGGGTGAAAGCCAGGGAAAGGGGAATCCAGTTTAATTCATATGCAGAGGATTCCCTGAAATTGTGCTTTCAGCAGTTTTTTAGTAACAAATGCATGTCCTGATTGAAAGTGAAAAGTTGAAGAATAATAGACCTGTAACACTGTGTTCTTGGGTGAGGCTCTTGTTCACTCTTATTCTCTGGGGAGGGTCAGCAGATTTGAGAGGGTGACCACATAGAAGTTTATGGTTTGGAAAATGTGGGTAACAACATGGAGAGATCCGTCACCATAGCTGGTTTGCAGCATTCTACCCAAACTGATAGGCCTATCACCTGTTCACCTTGCAAGACGAAGCTACTAAATAGAGGTTCTAAAAGTTGGAACCTCGTGTGGCTTACGAGTTTTATTTAGATAATTTTGAATCGATTCCACTGTTTTTTGAAATGAAGTATTGATAACTTTCTGATAAGCTGCCAAAATGTTCACTTGCTGTTACATGAATTTTAGTGGCAGTGGTTGTCACAGCAGCAGGCCTCAAAGCAGAACTATGCTCCCAGAAGAGCTGCGCAAGTGACAGCTTAGGGAGCGCGCAGCCCCGGCATCCTGCCTGCTGTCTAACTGGAAGGCAGTCTCTTCCTCCCAGGGTAAGAGCTGGGCCTCTGCACACAGACCTGGTTTCAAATTCCCCCACCTCGCATTAACTATGCAATGGTGGACAAGTCACCTAACTTCTCTGAGCCTCAGCGTCCTCATCTGTGAATTGGAAATGGTTTTATCAACCTCATGTTATTGCCAAAAGGATTTTAAAAGTAACGCAGGTAAAGGGCAGGCCGAATGCGTCATCTTCATCAGTAAATGGCATCCGCCCTTGCTGGTTGTGATGGAGGTGGTGGTGGTGGTCAGCATTGCAGACAGAATCACCTGCCTGCTGATACTGGGTCGCTCTGATTGTTCTTGTCAGTGAATAAATTTGATTTGTCACCATTTTCACCAGTTCTTCCTGTGTGTCAAGAGGTCTTTTGATGTCTTGGTGTTTGCCCTGAGAACAGACGTGTCTGTGCTGAAGCAATTGGTCATCTGCAAGGTTTGTTTTCATTTCACCTGAGAACAGACCACACCCCACCCTTAAAATACTTACTGCAATCCCCAGAGGCCAGGAGGCTGCTCCTGAGACTGCAGACTCAGCCACCAATTACCACAAGGTTGACTTTTGTGTTTTCAGATCTTTCTTATGCTTGCTCAGAATACTGAAGGGTGCTTCGCTTTCTTTTTCCTGACACTATAGTTCAGAATAATTTCTTGTTCATCAGGTTGAAGGTTTGCAGCTTCCAGAATGCTCCTTTTTTGAATATTGCAGCCAGCAAAGAATTGGTAGCCATGTCTGCCTCTGCAGTAAATAAGCTGAAGCTAATAAATATTCACTTGGATCAGTCCTGGCTCCCTGAAATGAATTTCTGAAATCTTCCTGGCCCTGAGGAGAGGCAGGGCATTGACTCCAGAATGCTCATTTCTGGCTTTCTTTGGCATAAATCTAGCAGAAAATCAAGTACGAACCACCTGCTGTGCACTCCTAGCAAAAGAGGGCCCTATGGTTAAGGGGTCCCTTTTTCACCCATGCGCACCAGGTAAATAGACCGTATTATCTAAGGTCCTTCTGTCCCAGATGGTAGGAGCTTTTCCCTAGGGTCCTGAATAATACATTTAAACCTTTTAAAAAGAGCATCATCCTCACTTTGAATAAATGTGGTGTGTTTTGAGAATCCACAATGAGGCTGGAGAGGCCATGTTTTCATTAAACCAATGCATATTTTTCTCTAGATTTTTTTAAATTAAGACATTTTGCAGATACTGAAGGATTTTTAAATATGTTTAACTTTTAAATAAAAACTATAACTTTTTAATGTAGCAGATTCTTCTTTTCTGTTTTTCTTGGCTCTGTGTTTATGTCTTGGTCTGCTTATGTATGATGTAAGCAGGCAGGAAGGGTAAACAGTGAAGAAGTTCAGAAGAAACAGCTGTGGGCTCAAAATGGAAGGAGAACTATATTAGTTCCAAGTTCAGACATCGGTGTTCCTCTTCCTAAAACTGAGATTTGGAATCTTTGGCTTCTCTCTGTCATCTTGGCAGTAATTTTGGTACAACTAAACGATGCAAAAGTCATTCTTATTCATCCTGCAACCCCTGAATAATCTTTAAATGCTGCATTTGTTAAGCCCTGTGCTAAACTGCGGCACTGAGAAAGTAATACGAACCCGATTTATCCTCCCAAATATGACCAGCTGCCCAACAGTAGTTTTCTTCAACAGAATTGATAATGTGGGGAATTAATTTCATATGTTTCTTTTGAGGTTTCCCTCAGAGTTATCTGGAGGTAACATGTCACTTTTCCCCTTGCAAATTGTTGAGCTGTCACATTATAATTCCAGCACTGGAAGATCTTTAAAATTCTTACTCCATCCAGTGGTTTCAGTGGGGGGCACTGACTGGCAATTGACACCACCTTTCTGAAGAGCAGTTTAGCCAGAGTAGAAGGAGGATGATCTGTTGAGGGTTTTTGTGGCAATGCAAGAAGGAGATGGTGCAGGCAGTGGGGGTAGGGAGAAGTGGGTGATTGAGGTTCATTTTTCCTATTGAATGAATGCTTGATCAGTGAAAGCTCCTCCATGATTTGTCATGGAGTTCGATGAGCTGAACTCATGGAGTTCCTCTCCTGCGGAAGTACAGAGTGGCCTCCTCAGAATCATCTTAACCTTCTCTACTGTCCTAAAAGTTTTCAAACACAGTGAAATTTTCATGAAACTAATTGTGAACAGGGAAAAGCCAGGAGAACTAAATGTATATGCCTGTTCACAGCCCTGCTTTTAATTTCCAAGCACTGTTTTCAGAAAGCCAGGTTTCAGTGTATTCCGCAGAATAGACACAGAGCTCTGAAGTGTCCTGGGTCAAATGCAACACATCCTGTCCTGTCTTCTTAAAGGACTTTTCCTGTCCAATGGCTTCCCAATGCTTTCTGGTGTTCCAAAATCAATCACACACCACACAGGCCTAAACCGCCATGGCCCAGGGCTCTACCTGACCGCTGGCCAACCCCCAAGGCAGGTTCCCAGAGGCCCATTGACCAGGTGTTCCATTCACTCAACTCTTGAATTCATATATTAAAGTCAACTTTTTAGCACCTATGGGACACAGTGATGGCTTTCTCGTTTCCTCATTGCCCTTGAGCCGTCTCTGTCAGCACTGTATTGTGGGTAGTTCTATTTTTGCCATACTTAATTTGTTCTAAACTCTTGAAACAGAAGGCATTGATTTGTTGAAACAGAAGGGATTGATTTGGTATATCATGCAAACCAGTAAAAACCAAAATGTTTTTGGTTAGAATGAGCTACTGAAGTACCCTGTGTGTGACCAAGTGTGACCAGAGGAGGACTGGACTGGGTTTACTGTGAGCCCTACCCACATGCCAACTCACACCTCCTCCAGCTTCCTCATTCGTCAAGTAGGGGTGCCCTAGAGCAGGGGCTCTTGACCAGCCGGGCGTCAGTTACCCTTGGGAGCAGGGCTACAAAACAAACAATGGAACAGGCTCTTGGGCCCGCTCCAGCCATTGATTCAATACTCTAGGGGAGGAACTGAGCAATCTGTATATCAAAAAACAAAAACCTTCCCCCGGGGGCTTCTGATGCTCAGCCAGGATTTGAGCACCACCAGATGAGGCCATCTGTAAGATGCCTCGCCAGATAGCCTTGGGCTCATGAAAGGCTCTGAGCTATTGTTTCCCCATCTGGAGAATAAGACTGTGATGGGGCCAGTCACATGGGCCAGTTCTGGGGATTACATGAGTGTGTGTGGAGGGCCTAGTGCAGTGCCTGGCATGGAACAGGTGCTCAGCAGCTGGATGCTGCCAGCTTTCCTCCACTCAGAAAAGACCTACTGATGCCCACAACATGCCAGACCCCATTTCTGGACCTGGAGAGGCAGTGGGAAGGAAGGCAAGCCTCCTGTCCTCACTGAACTTCCATCCTGTGGGCAAGTCAGGCAGGAAACAAGTAAACAAAGAAATAATAGAGCTTCAGGCAGTTTTAAATATTATGAAAACTTTAAATTTTGAAATGGTAAAAAGGGTCCAGTGTAATGGCTCATGCCTGTAATCCCAGTACTTTGGGAGTCCAAGGGGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATAGTGAAACCCTATCTCTACTAAAAATACAAAAATTAAGCAGGCATGGTGACACACGCCTATAGTCCCAGCCACTCAGGAGGCTGAAGCAGGAGAATCACTTGAACCCGGGAGATGCAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGTAAAGAGAATCAAGGTAACAGGTACTGGAAAGAATGTTTTGATAAGGTAACTGGGAAATGCCTCTCTGATAAGGTGACATTTGAGCTCAAGGGAGTATAAGAAGAGCCACATGGGGGTTTATGGGAAAAACAATTCAGGCAAAGGGCACAGCAAGTGCAAAGGGCCTGAGGCAGCATTGACCTTGGCATTGAGATATGCAAGAGCCGTGGTGAGAATCAAAGTTGAAAGTGAGCCAGGGGCTCAGCTTGCAGGAGCCTTGGAAGCAGCAGGTGCCTCAAGGTGACTTGCTGTATTCCTTCATTGACTTTTCTTAACTTGCCTACAAATGGATAAAGAAGAAATTAAGTCAGACATTTAAGATCCTTTTCAACCCTGAGATCCTATTATTCTATAATCAGATTTTTTTTTCAAGTTTAAGAAGGGTTAACAGTAGTTACAATATTATTTCTTGAAGTCCCGAATTCTAAGACCGATGCTGATGATCCTTCTCTCCTTTCCCCTCAG
Seq C2 exon
CTTGATATATGGTCCAAATCCAACTATCAAGTATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160563-MED27:NM_004269:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
NA
C2:
PF115713=Med27=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)