MmuINT0097506 @ mm10
Intron Retention
Gene
ENSMUSG00000026799 | Med27
Description
mediator complex subunit 27 [Source:MGI Symbol;Acc:MGI:1916225]
Coordinates
chr2:29500219-29509464:+
Coord C1 exon
chr2:29500219-29500326
Coord A exon
chr2:29500327-29509422
Coord C2 exon
chr2:29509423-29509464
Length
9096 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTTCTCTCTCCACAACAGCTG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GTGACCTTGGGGAAGGTGTTGAAAGTCATTGTGGTCATGAGGAGCCTGTTCATCGATCGCACGATTGTGAAGGGGTATAATGAGAGCGTCTACACAGAGGATGGAAAG
Seq A exon
GTGAGTGGCCTGGAGTCTTGGGGATAGGTTCTTCCTTACTCTGTCCCAGAACAGAGTTCTAGGTGAGTTGTACTAATAACCAGCAAATCAGCACTGGACTGATCCAGACTAGTCAGCATGAAGAGGGACCCTTGACAAATACTATTTCATTCTCTCCACTTGCCGTTCTAAACCTCTGCTGCTCACAGCAAGCCCGATGCCCTCACTTGAATTTCTAATTGAGCACCTTAGACCCTAGTTGCCTCATTAGACATGTCTTCTGAGGAAATAGATTTTTTTCAAGTCAGCCAGCACATCAATAGCCCAGGGTTCCACATTTTGCTTTTCATAGAGTCACTAGGAAGACTCAAGTTAGTTTGACACAACCCAATGACACGCTCCTTGACTCTCACAAGGAACAGGCGGCCCTTGGGAAGTCACATCTCAGCTGCACACTGAATGCCTCAGCAGGAAGCAGCAGCTTCTTCCCACAGGTGCTCTGCCTCACAGAACGCTTACTCTCCACAGCTAAACACCATGAGGGCCAGGGCCTAAGTGAAGAGGCAGGCGCTTTCCCCAGGTGATGGCATCCCTGGAAAGTTCACTCTGGTGGACCTGTAGTTTCTTGAGTGTGCACTCTCCATCTGGCTCTGGGGGAAGCAACGGAGGACACTAATGAGAGCTGGCAGCCTTCATTTGTGTCTGCTCCCAAGCATGATGAGCACCTGCCCCACCCAAGTTCCCCCTGTCACTCTGCAGCCTGAGGACCCCCCCCCCTTTCCTCTCTTGGGACCTTTTGCTTTCCTCGTTTCAAATGCTAACATTTCAATGTGTTTGGTAACTCAACGGCCACATTATAATGAGAATAGACTGTTCTTGAAAAGCAGGTGGTAGAGGTGGCTTTGCCTATGACAGATGTTCTGGTGCTGTGCTAAGGTTAACACGGGAGCACACAGCATTCCCACGTGCCACAGACCATGGCTACCAGAGGAGTGATTGTTCTTCCAAGTTCTCTGCCTGCTCTGCATAGCTCTCCCATTTGATAGCAAGTCATTTGTTGGGAGATGCCCTTTTTATTTCTGGGAAAATCATACTGTCCTTCGAGCAAGAGTGCAGAGTGAGTGTGACAGTCTGGTGAGCTTGGCCTCCATGGGATTCTAAATTCTGCCTGGGTCAAGTGGGGTTTCTGATTGCTGGTCTACTCTAGAAGACAGGCAGGCTTAGTGCACCGCCCAGGAAGACTGGCCCCCGCTGAGCATGTGAAGTTCACTTCTCTTGGCTCTTCTCAAGCTTCAGGTTGAAGATTCAGTAGTCACACCTGGTATGAAACAGCTGCTGCTCGCTTAGGCAGGGATTGGATATTGAGAACAAAGAAAGGCTGTAACTAGCACCAAGCTTGCAGAGTTACCAAGTCAGGATGCAAATGAGCCACACTCCAAATTCAGACCAGGAGTGGAGATTCTGCCAGATATGTGTGCTACTGGCACGCTGCCTATGAGGTTCTGCTGACCAAACCCCAACTGTCCACAGTAACACCCAGGGACACCTACACTCTACCAGTGGGGAGCACTAGTACTTGATGCTGCACTCAAGACAAGAAATTATCTACCATGTACCTCTTTAAGCCCACCCCGGTGGCCTGCTGCAGCCATGCTTTGTTCTTTCCCATCTCTTCCTTGACTCCTCTTCCCTGGGCTGCTCTCTCCCTCAGCCCCGCTCCCCTTGTCTGTTCCCAACCATGCTGCCAACACAGGGGTCACTCCTTCTGTCTGGGCTCTTCCTTTCCCTATCTCAGATTCCTTATGTCCCTGGACTTAGTTAGCTATACCACCACCCAACTACCTAAACCTTCCTCCCTGCCACCCCTGAGGGCTGGGCTGTCAGCAGGTGCTGGCTGTCACTTCTCTTCAAGTCCTCCCCTTGCCCCCACACCCCAGGCCCTCTGTCTGTTCTCTGCTTCATCATTCTTGCCTTCATGGAGGCTCCAGTGTCCCTGCCCTCAGCCTGCAAGTTACACTCCCCATAAACACCTGTGAATACATCATCTCTCCTGCTTGCCACCATCCCAGTATACCTGGGGCAGTCGCACCAGAGCAAGATAGGTATTAATGGGTTACAGAGAAGCCCATGCACCCAGGTTTAAGAAACCTTGGGTTACAGATGGTTCCCCTCTATCTTTCTTTTGCAGACCCAAGGATAGAGCCCAGGGCCTCTCACAAGTTAAGCAAGTGTTCACCCCTGAGCCATCCCCTCCCTTCACCCCAGCCAAGAAGTCAAGTGTGTTTAGACATTCTTAGAGCCTTTGGTTTATGCATATGCCTTAGGAATGTGTTAATAAGTACACATTTAGCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCTGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGGCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAGGAAAAAAAGAAGTACACATTTTCTCACAAGGTCACCAAGTTCTTTTGTGATCCCAACTTTGTCCTCAGAGCATATTGTATTGGCAGCTTGTACAACATGCTTCTGAGATCTGGCTTATGGACACCTTTGCAAGATCTGACCCTACCTGCCCCCATTCTCTGCATGTGTCCTATCCACTCCCCAGCCGTGGTGCCCACGTGGTCCTAGGACAGCCAAGCTATTACCCACATTTGCCTGTTCTAACTTTCCTTAGGTGCTTGCTCTCCTACTCCACCCCTGGGCTCATCTCTCCCTCTCCCTCCCCCTCTCCCTCCCCGCCCCCCTGCCTCCTCCTTCCTTCCTTTCCCCCTCCCCTCCCCCTTCTTCCCTCCTGCCAGCCCCCAGCTACTAACTTAACTGACTCCGTGAATAACTCTCTTGCACTCCCAGTGCTCATCTTGGCCATAACTGCTCAGACTGACTCGTTACAGAACGGGAGGCTGGAACCTAGGGTGGGGAATCGCCTCTGTGAACGAGTCCTGTGACCATGTCCTAAGGGTACACCTCAGTGCCTGCAACAGCCTGGAAGCACTGGTGTGTGTGGGAAAGAGGCTGATGGGATAGCCTGCCTGAGAGGCAAAACTGCTTAGCTGAAATGGAACCCTGAAGAATCAGGAAGCCGCAGGCATTAGGATCATAAATGACCAGACTAAAGGGGCACACATGAGCCCATATACACAGCCTCCTCATGAAAGATTGCTGTATCTCCACTGTACAGCAGAAAGTGGGCATTTTGAGGGAACCTGGGTTTGAGGATGGCTTGTCTCAGAGCATGCTGGGGCACTGTCTCAAGCAAGGAGTAGAGCATGTAGCTGGTATAGCAAAGTTATATATGCTGACGATCATCACATAAGGCCCACACTAGAATTCCTAAGTACCGTCCTAAGCCCATCTCCCCAAGGCCCATCAGCCATGTGACAGATCTTAGCTGAACATCAAGTCCATTCTCTAACAGAAGTCTCTGAGTCAAGGGTCAGGATCCTGGGGGAGACTGTCCAGCCGCAGGGCAGATCAAGGTGTCGTCTCTCCATGTGCAGAGCAGAGCACAGTTGGCATCACTGGGTTCCGGTTCTCTGGCTCAGCAGCCTTGGGTACGGTGGGATCCTGACTGAAGGGCTTCTTTTTTTTTCCCTGTGCTTATTACAGGCAGGAAGTTGTTGATCCCTTTTACACCTGTGTACATGGGCCCATGTGGCAGGTAGGGACCTCAAAACAAAAGCAAGCAAAAAGCAAGCAAGACTGGCGGGGCCAGGCCTCAAGTGGTAGAGAAGTGGGCTGACCGGCCTGAGGCCGACTGCTCCTCACCGTGTCATTAGTGCCAGTTTCTTAATCACCTAACAAAAGAGAAGACACTGCAAATGTCCGGTTTTGAGTGCTGAGCCTGCAGTGGGCACACTTGTGGTACACAAAGTGTCAGATTTGGAAAACACCATTGGAGCTCAAGGTCTGGTCCCTGGCAGATCGGCTCTTGGGAAGTTGCAGCCCTGCATTTGTTCACCTGCTACCTGGGCTTAGGACTTGTTCTGCTATGAAGCTCAGCCTGGGGTGCACTGGATGGACTCATAAAGCCTCCCATGGCCTTAACCTCTTGCCCTGTGTGGTTGTCCCCCATGTGCTGGTCCCCAATACATTGTCTTCAGTGCTGTGGTAGTGGCCAGCCATTCCTCCTCCCACCCACAGTTTCCAACCAGCTTTTCCCACCAGCATCTGTCCCACACACCGTCAGCTTGCACCTTGCTGTAACAGTCACTATCTTGATGCCCTGTCTTTACCCATGATGCATATTTTTTATATCAAGCACCGTACCCTCATTCCTCTAAGAATAAAACTGCCGTTCAGACTTACCGACCTCTCTTGGCTGCAATCAGGGAGTAGGGCCGTGACTCAGCATGTTAACAGGCAAGGTGTGGGAACACCTGGCCATTGTCCTGATTTTATATCAGTCGGGCTGAACAGATGGAAAAAATAGAAGTGTCTCCATTGAATTTATCTTATTAGGGGATTTAGGTTATGTTAATGCTATAGCTTCATTAATTACCCCATATCAATAAAAAAAGGCAGCTTTTAGCCTTCCAGCGTAAGAGAGGAGAAGAAATGGCGGTATCAAAGGGAACCTTCAAAGACAGCCAGAGCTGTCTCCAGGGTAATTTCTGATCCTGCATTCTTCCTACTTCAAAGTTGGATATGTGTGTGTGTTTGGGTCGAGGGGGTTGGGGGAAGCTTGAATCTGATTTCTCTAATAAGTGTTGGCATCAGCCCCGTTTGATATTAGATGCAGGGAACATTTTGATTTGTTATAGCCTTTGAAATTGTTCAGACGACCTTCAGAAAAATGGCCTCTTGTTACTTGTGGGGAAAAGGGTGAGAGCCGGGAAGAGTATGAATCCAGCTGGGCTCCTGCACAGAGGGCACCCCAAAGTTGTGCTTTCAGCAATTTTTTGGTAACAAATGCATGTCCTGATTGAAAGTGAAAGTTGAAGAATAATAGAGGCGTAGCGCTGCTCTCCTGGGATGCTTGTCTCCTCTTCCCCTGGAAGGGTGAGCACACCTAAGATGACCACACACAAGTTTTCCATGGCTCTGAAAACTTGGGCAGCTGCAGAGAAATCCCTCACCGATGCCCAGTCGGATCCTTAACCCAGATGGGCACGTCTGTCTTGCAAGTCAGAGGTCCCTTTAAAGGTTTCCTTTAGAGGCTGAGGCTGCTGCGGCTTACAATCTTCGTTTGGAAGTGTCCATTTTAGATCATTTAAAATTCTCTGTGTGTGCTGCCTTTTGAAATGAAATAAAGAATTGATAACTTTCTGATAAGCTGCCAGCGCTTTCGTGTACTGCTAAATGAATGTTAGTGGCAGTGATTTGCTGAGCAGCAGGCCTGGCATAGGTTTGTGAGGCTGAACTCTGCAGGAGCACCCCAGAGAGGTGGGGCAGTAGCATTGTGGGGAGGCTCTGGGCCTCTGGACACAGGCCTGCTTCCAGACTCCCCACTCCTTAGCAGTGATGCTCTCTGAGCCTCAGTTTCCCCATCTCTGTGTTAGAAGTTACTCTTATATGTTAGCACTGGAAGGGGGCCCTGCTGACCACAGCAGGAGTAAGAGATCATCAAGGACAGGGTGACCTTGCCTTTGGTGTCAGACCATGCTTTTAGAGGGGTTTGGGTTTGGTTTGCTTTTGTTTTGACATCTTGGTATCTTATCCTAAGGACAGATATGAGCACCCCACTCATCTGTAGAGTTGCATTTCACTCCCCTGCAAATAGCCCCTGTCCCCACCTGAACACACTCCAGCCCTAACACCCTTAGCTGCCTCTGGGACTGCAGCTTTGTCCACCAGGCTCCACAGGCAGCTGACGTGGCCCTTTCAAGTCCTTAAGGCCCAGTGTTCTGAGGGGAGTTTCACTCTCTTCCTGACATCCCAGTTCCAAATAATGTCCTTCACTGAAGGTTTGCAGCTTCCAGAATGTTCCCTTTTTAATATTGCAATTAGCAAAAAAAAAAAGTTATCAATGCTTGCCTTTGCAGCAAATAAGTGAGAGCTAATAAGTGTTCACTGAGCTCAGCCTTGGCTTCCTGAAATGAATTTCTAAGTCTTTTCCTGGCCCTAAAGAGAGAAGAGCATCAACTCCAGAACTCATTTAAAGGGCTTTCTCTAGCATAAGCCTAGCAAAGATCAAGTATATGCCACCCGATTCAGGTTCAGAGCACAAGGGGAGCCATTGTTACCGGCCCCCTTCTCAGCCATGTGTGCGAGGTAAATGAACTGTATTGTCCAGCCTTGCTGTCCCAGATGGTAGCATCATCCTCTAGCATTCTGAATAGCTTATTTAAAACTCTGAAACGGAGGCATGATGAATAGGCAAGGTGGGTTTTGAATATCCACAACTAAGTTTGCAGAGTCCATTCTAAAGGAAGCATGTGAGCTTTTCTCTTGAGCTTTGGTTTTTGTCTTTTTGTTGTTTTTGGTTTGGTTTTTGTTTTGTATTTTTTTTGTAGATTTGGTAAAGTCTTCCATCTTCATGTCTTTGTGGCTGGTACCCTTGTGGCAGTGTGCTGTGTGTGGTGTGAACGGCAGGAGGTGTCGCCAGTGCTGGCTGGAAATGAGAGAGAGGACTTCTAAAATGGATGATGCGGCTCTTCCTGAAACTTAAAGTCCTGCCATCATGATCTGGGTAGAACTAAGACGTGCAACGTCAATCCCACCCCCCTCCGCTCCCCTCCCCTATCCCTGGGCAGTCTTTAAAGGCTGCATTCCTTAAACCCTGGGCTGAACTTGCCCTGAGGTCACCTGAGCCTGACTCTGCCCACAGAGCCAGGCCAGGATCAGAAGGGAGAATGTGGGGAACTAAATGTATGTATTCCTTTACATTTATTTATTTTGTCTATAAACATGTGCGTTCAGAGATGAGAGGGCGGCTTACAAGAGTCAGTTCTCTCCTTCACCATATGCGTCCCAGGGACTGAACTCCGGTCAGGTCAGTCGTTAGGGTTAGCAGCAGGTGCCGTTTTTCACAGAGCCAACTGTTTTTGTGAGTTATCCTACATACTGTTTAGCTCTCATGCCCCAACCCCACTACCCCCACCCCACCTCCCACCTCCCACCCCACCTCCCACCCCACCTCCCACCCCATCCACTGCTTTAAAGGACAGAGATTGAAATTTGAGGTCGCCTCTCTAGGGGGCAGTTTGGCATTGGGGATTTGCTGTTAGGTCATAGGGATATAGCATGAGTGATATACATTTTCCCTGTATGGGTGTGTGATCAAAGATCCACCCCTCCTGCCATCCTGCAGGTAACCCTGACAGTCCCTCTGCCCTTCAGCATGTAAGGTGTCAGGCACCTGAGACTTAACAAGAAACCAATCCCAAGTGAAAAGGAGCTAGAGAAAGGAATGCATGCCAGGGTGTAACCCAGCTCCAGTTTCCAAGGACTCTGAGGTGCCACACTCACTCCCTGTGACCCAGAGGCATGTCCTCATGCAGCCACTTCCCCTGTGCCCCACTGCAGCAGGTCAGTGTGACAGCACATGGGCCCGAGCTACCCCAGGTCAGTCTTGCAGTCTGACTACCAATCAACCCTAGAGACAGAACCAGGAGACCCATTCACTGGCTGTTTCGATTTGCTCGGCTCCTGACCTCATTATATTAAAGTCACCTGTCTAGCAGCTCTGGGACACAGACGACTTCCTCACTTGTCATTACCTGTGAGTGGCAGCCCAGCCTCTGCTGTCTCTTAGAGGAATTCTGGGTTTGCCATTCATCATTTGTTCTGAAGTCTTGAAACATGCAGCCAGACTTGTATGGGTTGCTGTGCGAGCGGGGGAAAGCAGTAATGGCTTCAGTTACATAGGAGACACTGAGGTGCTGTGCATGAGACCCCAGTGGGGGGAGGGGGAGGCTGGACTGGTGGAGTTCCCCGGAGCTCCAGCCACATCTCATCTGGGACCTCATGCTTCCTTGTGTGTACAATCCAGTCTCTTTAGTTCAGGGCCTCCTAACCCAGGCAGTTCCAGAGCACTCTAGGGATGCTGCTGAGAAACAGATAAGGAGCTGCCTCACAAGCCAGCTCTAGCCCTCCAAACTCAGCCAGATGGGACAGCAATGAATGTGTAACTTAAAAAACAAAACTCCCTGACAGTGGCGTGGTGGCATCTCTGACTCTTGCCAGCTCTTGGGACCCTTGTCCTACTGGTTGCTTCGTCCTCTCAGTATGAGGGTTTGTGTCTGGTCTTACTGAAGTCATGATGCTGTGTTTGGTTGATGTCCCTGGAAGGCCTGCTCTTTTCTGAAGAGAAGAAGAGAAGGAGTGGATCTGGGGAGAGGGGAGGTGAGGGTGGGGAACTGGGAGGAATGGGGGAAGGGAAACGGCTATAGGGATGCAATTATGAGAGAATTTTTAAAAATACGGGAAAACCTCCCCAGGGGCTGCCAGTGCTAGCCCAGCTTGAGCAGCCAGATGACCCTGCCATGCCTTCTGTGAGAGGTGAACTCCCTCTTCATCTGGAAAGCCAAGGTCATTCTGGAGACTAAATGAAGGCGTGTGTGGAGAGGGTCTGCCGTGACTCCTAGCGTGCAGTACTATCCTCACACTGGTCCTCTTTACCCAGCAATGGCCTGCTAATGCCCATGATGTGTGGCCAGGCCCAACACTTCTGTCCACAGGGTGGTCTTTACTGTCAGAAAAACTAACTTCTCAAAAAGGAAAGGGAGTGGATGTCGGGAAGAATGCTCTGACTGTAGTGACACTGAGCCGTGTGCAAGCTGTGTGAAGGGTGAGCCAGGCTAAGAGCATACGTGCCTTGGCACTTCAAGGGATACAAGAAAGAGCCTTGGGGAGAATCAGGGTCTACAGTGGGCAGGGATCTCAGCTCATGGGGCTGTAGGTAGATGACCTCAGATCCCTTCATTCCATTCCCTAAGTCACCTGGAAATCCGTAAAGAAAAAGCCTAGGCAGGCCACAGCAGCCCTTTGCCTGCCACCGGGGCCTCTCTGTCACTGTTTGATTTCTTTGAGTTGACTCAAACTGATACTGTTCTTCTCTCTCCACAACAG
Seq C2 exon
CTGGACATATGGTCCAAATCCAGCTACCAAGTGTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026799:ENSMUST00000028139:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115713=Med27=PU(3.4=8.3)
A:
NA
C2:
PF115713=Med27=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types