GgaINT0125269 @ galGal3
Intron Retention
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8188967-8191590:+
Coord C1 exon
chr17:8188967-8189059
Coord A exon
chr17:8189060-8191533
Coord C2 exon
chr17:8191534-8191590
Length
2474 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGGTTCTCTTTCTGTTGCAGCTG
3' ss Score
11.61
Exon sequences
Seq C1 exon
TTCCGCTTCAGTGGAGGAGGAGATGCTGGCTCCAAAGGACCCATGGTCTCTGCCCAGGAAGCTCAAGCCCAGGCCATCCTGCAGCAGGCGAGG
Seq A exon
GTAAGTGGGGGAAAGGGAGGATCTCTCGCAGCCCATTGTAGTGGAGGTCCAGAGTAAATCTGACAGAGCACTTGTCTGCATGCTTTCACCATCTGTGGTGGTGGCAGCTGCTCAGCCTATGTCTGAGATGGGACAGCCACATGGCTTTAGGTGGTGATGCCTGCATGGTTTGGGCTTAAACCTGCATGGTCTTTCATTGCCTGCAGAGCCAGGAGTGGGCCTTCTGCCGATGCCAGGACACATAGCAGTCCCTGCTGTAGCATTCACTGCTTCTGCTGACAGTTTTGAGAGCCTATATGAAAAGCTGTAGTATATGCTGCAGGGGATTTCTTTCTTTCGTTTTTTTTTTCCAGCAAATCTCACTCAATAATTGAATGTATGTCACAGATGTGAGCTGTTCCCAGCCCCATGAATCTCAGCAGGCAGCTGGCAATTTCCTTTCATGTGTTCATTTGAAGATGCGTGATGAATATCCATGCATCTTTTTTTTTTTCTTCCCCTCAGATGACCTTACTGATTGATGATCAAATAATCCCCAGCGATGTTTATTATTTAAGCTGACTGGTGAAACGAGATGGGCCATGCACGTTCCCAGTACAATTCCTGTTCTGTGGCTGGATGCGTATGTCAGCGTATCAGGCTGTACATGCTCATCTCTTCAAAATGAGACTTCATTTCTAGCTGGTACAGCTTTGAATCTTCCCTTTCATGCGTGCTTCTCTGAGGTTACTTTTGATCATTAGCTTGTTAAAAGCAGAAAAGCAGCTGGCACAATTACAGCTGAAAGCAACATGTAGGCAGCCTCCCATAAACACATTTGCTGTATTTGCCCCGGTCCCATCCAGGCTGTGAGCAGACAAGGGGAAAATGCACGGCGGTTTAGGCAGGCTGTAAGCAGAGCGATGCAGCCGTGGGTGCTTTGCTCCTCTCGCAGCCAAATGCAGTCACTCAGGGCTTCCCTGTGCTCCTCTGCCCTGAATGCAGTCAGCCTGCTGTTCCAAGCAGCTTGTGTTCACTCTGGCTGCTGAAATGGGCTGAAAAACCAATCCCTTTCACCTCTGAGTGGAATAAAATCCATTGGGATCACCAACCAGCAGGGTGACACATGCCCCTTTCAGGTTTATAATGAGGACTTGAGCTCAGCTGGGGCTATTTTGCTTTCCATCCAGCTCTCCTTTATCTGAGGAGTTCAATTTTTCACATGTTCAGGCAGAGCACAGGGCCCTGACGCCACCAGCCGCTGCATTTTCCTATCCATTAACCTTCCTCTGAGAGTAATATTGGTGTATTATGATTCTTGTGTTACCTCGTCACTCTTAATTTCCAGGCTGCCTGCAGTTTTTCCGCCAGTATTTATTTGGCTGGGAAATGGAGTTTCTGACCAGACCAACGTTTCATGGGAAGCATCTGCTTTCTCAGACCCCATTTTTCGTGTTGCTCTTGGGTTATTTTCTGCCTTGCAAAAGTAGTGACAGATTGGAGAAAAACAAAAGTACCCCCCAACACGCACACACACACACACACACAGGCGAAGAAAAACCTCTTTTCTCTCTTTTGTTTTCCATTTTTGGATAAAGGTTTTCTTAAATAAAAAAAAAACAAAAAAACAGCCCAAAGCCTGAGTGAGCTGGGGGCTGTGGAAGAGAAGCTGAATATATCCACAAAGAAAAGGATCTGTTTCTTGGTGAACATCAACCCATTATCGGCCGAGTTCAGCTGCAGTCCCTGATACCAGGGCAGATAGGGAGGTAAAAGGCATTTCTCAGGGGGAAATGATAGGCTGTGGCAGAGATGAGAAAGGAGTCCTGCAGGGGAAGTTCATCTCCTTCCTCTTCTTTTTTTTTTTTTTTTTTTGGAGTGTGTTGTTAATTGCATCATCAGGTTGATTTATTCCCTTAAATTTGGCTTTCACTAGTCACCAAGTATTGGCCATTGGCTGAGCCAGCAGTGCTTCTGATCAGCTCCCTTGTAAAGGGGAGTTGTGAGATGGTGCCACATAATCCCACGTCTTTGCAATACTTCAGCACTTTCAAGTTCAATCAGGGGTAGATTTTAGTTGCCAGAGCACACAGATAATTACATCTCTTAGAAAGTACTGAATTGCCACGAGAGAGCACATTGTCCAGTGATGCCACAAAGTGTGGACAGCCCCATTACCCACCGTGGAAACTGCTGACCTAAGGTCTGGTTGCATGACCCCTCACTAAGCTAAAGACCCCTTCGTTGGAGGTAGAGTTGTTCTGTTTGTGAGATCCTACATGTGACCATGGCCTTGGCCCATTTGTGGATGCAGGAAGGAGTTAATTGGCATTACTCTAGGGTAAATTCGTTGGGATGGTGGAAACTGCTGCAAGGATTTGTGCTTCCCAGGGAGTGGAAAGAATGCATAGTGCAGCTCATGGCACGACGGTGGCTTTGTCCCATTGTAGCAAAGCAGGGACACAACTAAAGCAATGGTTCTCTTTCTGTTGCAG
Seq C2 exon
CTGGCACTGAGAGGACCGGCGGGTCCAATGGGTCTGACCGGGCGGCCCGGCCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546:ENSGALT00000039035:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139113=Collagen=PU(26.6=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]