GgaINT0125335 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:940455-941540:-
Coord C1 exon
chr17:941433-941540
Coord A exon
chr17:940573-941432
Coord C2 exon
chr17:940455-940572
Length
860 bp
Sequences
Splice sites
5' ss Seq
GGTGTGTGG
5' ss Score
-4.73
3' ss Seq
NNNNNNNTCTCTCTGGGCAGAGC
3' ss Score
0
Exon sequences
Seq C1 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGGGT
Seq A exon
GTGTGGGGGCACATGGGTGTCTTGAGCTGCAGGGCTACCCGGTGCCCTCAGTGTCCCCAGCCCTGCAGGTGGGCTCTGGGCCGGGCTGAGCACACCTCCTGTCCCCGACACTCACTGCTGCCTGGAGGAGGTGGCGAGGAGATGCGCTGGGTGCCTTATCTGCACCGCCCTCACCACGGCCACCTCTCTCTGGCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTGGGCAG
Seq C2 exon
AGCTGTCCTGCAACTTCGAGGCGGGATCTGTGCGGTTGGTACCTGGACCGGGGCAGCGACTTCCAGTGGGTCCGCAGCACAGGACAGGGGCAGGGCTCCGACCACACCACCGGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(21.5=72.2)
A:
NA
C2:
PF0062918=MAM=PU(22.3=87.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCTGCTGGGGATGG
R:
GATCCGGTGGTGTGGTCGG
Band lengths:
223-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]