HsaINT0098617 @ hg38
Intron Retention
Gene
ENSG00000177943 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr9:136856018-136856826:+
Coord C1 exon
chr9:136856018-136856149
Coord A exon
chr9:136856150-136856463
Coord C2 exon
chr9:136856464-136856826
Length
314 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CATCCCCCTACCCCATGAAGCTG
3' ss Score
4.2
Exon sequences
Seq C1 exon
GGCACTTCCTGTCTCTGCAGCGGGCCTGGGGGCAGCTAGGCGCTGAGGCCCGGGTCCTCACACCCCTCCTTGGCCCTTCTGGCCCCAGCTGTGAACTCCACCTGGCTTATTATTTACAGAGCCAGCCCCGAG
Seq A exon
GTACCGCCACACTCCGCAAGTTCCCTGGCCAGCCCCTGGGTGCTCCCTGCACAGTGGGAGGGGTCTGGGGCCGGGTGACCCACAGTGCCCCCCGCCCCGCTGGCCAGGCTTCCTGGCACTAGTTGTGGTGGACAACGGCTCCCGGGAGCTGGCATGGCAGGCCCTGAGCAGCAGTGCAGGCATCTGGAAGGTGGACAAGGTCCTTCTAGGGGCCCGCCGCCGGCCCTTCCGGGTGAGGAGGGCAGCCCAGAGTGGGAGCTCCGCTGGAGCGGGCCCTGACTTAACCATCCTCCTCATCCCCCTACCCCATGAAG
Seq C2 exon
CTGGAGTTTGTCGGTTTGGTGGACTTGGATGGCCCTGACCAGCAGGGAGCTGGGGTGGACAACGTGACCCTGAGGGACTGTAGCCCCACAGTGACCACCGAGAGAGACAGAGGTTCCTGCTGCCCATCCTCACTCCCACCTGGGTGCTCCCCTTACACTCCTCCAGGGACCCCGGAGCTTCCACCTTCTCAGGGCTCTGGAGGGGGAGGGGAGAAGGTGTGTGACGCCACCTGGCCCCACCCCCAGAGGTCTCCTGTAACTTTGAGCGGGACACATGCAGCTGGTACCCAGGCCACCTCTCAGACACACACTGGCGCTGGGTGGAGAGCCGCGGCCCTGACCACGACCACACCACAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177943:ENST00000485732:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.288
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(53.0=100)
A:
NA
C2:
PF0062918=MAM=PD(18.4=73.7)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCTGTCTCTGCAGCG
R:
GTCACACACCTTCTCCCCTCC
Band lengths:
355-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development