GgaINT1017302 @ galGal4
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:559168-559476:-
Coord C1 exon
chr17:559346-559476
Coord A exon
chr17:559274-559345
Coord C2 exon
chr17:559168-559273
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACCCCCACCCTCACCCCCAGGTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
Seq A exon
GTATGGCCAAGGGATGGCCCAGCTGGGCGCAGGGCCACGGCCCCCAGGGCTCACCCCCACCCTCACCCCCAG
Seq C2 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000040444:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.7=100)
A:
NA
C2:
PF0062918=MAM=PD(16.8=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACTCCACGGACATGAC
R:
CACTGCACGAACGTCACGT
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]