GgaINT0125410 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7450084-7450462:-
Coord C1 exon
chr17:7450348-7450462
Coord A exon
chr17:7450260-7450347
Coord C2 exon
chr17:7450084-7450259
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CCATCCTTGGTCCCTCCCAGAGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTGACGAGCCAGGATAAGACACCGGTCGTTATTCGCAAGGCCATGGCCAAACACAACTTGGATGGGGACCGGCCTGAAGACTACGAGCTCGTTCAGATCATCTCAGAGGAGAGAG
Seq A exon
GTGCGTATGGGGGATGCGATTCTCTTCCTGGCCTGGGCTCTGGGTGGGAGCAAACTGCTCAGCTGACTCCATCCTTGGTCCCTCCCAG
Seq C2 exon
AGCTGAAGATCCCCGACAACGCCAACGTCTTCTACGCCATGAACTCCGCCGCCAACTACGACTTCGTGCTGAAGAAGCGGGGTTTCTCCAAGGGGGTGAAGATCAAGCACGGCTCCAGCTCCACCCTGCCCAGGATGAAGCAGAAAGGCCTGAAGATCGCCAAAGGCATCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTATTCGCAAGGCCATGG
R:
GGAGAAACCCCGCTTCTTCAG
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]