HsaINT0137006 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135973107-135975769:-
Coord C1 exon
chr9:135975655-135975769
Coord A exon
chr9:135974150-135975654
Coord C2 exon
chr9:135973107-135974149
Length
1505 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
CCTCTGCCCCTCCCCACCAGAGC
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGACCAGCCAAGATAAGGCTCCGGCTGTAATCCGCAAGGCCATGGACAAACACAACCTGGAGGAGGAGGAGCCGGAGGACTATGAGCTGCTGCAGATTCTCTCAGATGACCGGA
Seq A exon
GTAAGTCAGAAGACCAGAGGGCGATGGCAGAGGGGGCAGGTCCACACCACTCCCCAGCCCCAGGTTGGAAGCCTTTGGCCCCAGAAAATTCACCAGCAGAGTGTGGGTAGACACTGTGGACAGGGCAGCCCTGGCTGCCCCCATTGTCTGCTTGCTGTCCCCAGCAACCACTGGACCTCCCCAGTGTGTGCCCTTCCCTAGGCGTGAACAGGCAGTTCAAAGCTCACATCAGTGAGGAGCAAAGAGAAAAGGCATTTTTCACTGGGACAGGTTAGCCACGTGGCCCACTGGAAGGGACTCTTTCTGGCTAAGACAAGAAAACATGTGCTCTACAAAGAATGGTGACAGCTGTGGACCAAAGTGTCAAGTGTTAAAATCCATGAGTGTGTGATTCTAAAAGCAGAACAGGCTACTAGGAGGCCAACTCAGTATTCTAGAAACTGGGAAAGTGTCAAGAACCAGTGCAGGCTCAGAGTGGGGTATCCTGGGCCTGGAGACGCTGGGCAAGCTCCTTAAGCCCTCTGTGCTTGTCTTCTCATCCCCCAAATGGAAATGAAAGTAGCCAGTGTGTTCATCATATATGTAAAAATCTATATGTATGTATATATGTGTATATGTATGTATATATGTGTATATATATGCATGTATATGTGTGTGTATATATATGCATGTATATGTGTGTGTATATATATGCATGTATATATAAAGCATCTATGTGCACCATAAAAGTTAACTATAAATACTATCATCGCTGTTTTCTTTCCAGTGAGCTGAACACCACCTCCCACCATTAGCCCAGACAGTAAGCAATGACTCCTGTGATCCCTAGAAGTTACAGTCTAAATCCTCTGGCAGCTTCTTGCACCATTTCGGTTAGGTGGGCAGGGTAGGCGGGACCCCCATCTTACAGAAAAGGAAGACTGAGGCCTAGAGAGGTTAAAGATGACGAAAAGCCACACGATGTCGGCAGGAGCACAAATCGAGCCCAGCTCTGGTTTATAGCAGGCTGTGGGCCAGAGGAGATGGTGGGAAATGGAGCCAAAAGGAAGTGCTTGCCGGGTGCCAGGGTTCAAGGAGTACAGGCCTCCCTGGAACGGGCGCCAGAGCCCTGGGGCAGGCCTGTCCTTTCCTGGTCCTTGGATCCCTTGTCCTGAGTAGGGCAGGATTCTGGGAGGTGACCTGGATTCTAGAAAGCCTGTTCCAGGTGGGCAGCCAGCACTGCAGTATGGGCAGGACGGGGTGACCCTCTGCCAGCTCAGGCCAAGCCGGGGGGTTCTGGAGTCAGTCCCTGTTTAAACAAGAGTCATCAGGTTTTGTGAGGACCTCAGCAGAGTCTGTCCTCAGGCAGGAGTCATTGAGAGGGGTCCTTGGAGTTCTGGAGCTGTATTGGAGGGGATCTGAGGTCTGTGGCTCAAGACAGTCCTTGTATGGGCTCTCAAGCGGTAGGGGTATCCTGCAGGGCCCCCAGGAGCATCCCTGATCACCCCTCTGCCCCTCCCCACCAG
Seq C2 exon
AGCTGAAGATCCCTGAAAACGCCAACGTCTTCTATGCCATGAACTCTACCGCCAACTATGACTTTGTCCTCAAGAAGCGGACCTTCACCAAGGGAGTGAAGGTCAAGCACGGAGCCAGCTCCACCCTCCCTCGCATGAAGCAGAAAGGACTCAAGATTGCCAAGGGCATCTTCTGAGGGCATCCTCCCAGGGTCTGGCTGGCTGGTAGCCAAGCACTTATGGACCAGAGTGGCCCAGGCCAGCTGGGCGCCTTCCTCCCACCTGCCAGCCCAGGGTACCCCAGACTCCAGTTTCATCCTGAACCTCTCCCGCTGCTGGGATTGACGCCTGCCATTGGTCAGGCTGACCTGGCCTCCCGTGGACCACTCGCTGCCTTAGGTGCCTTCTGCTCTCTGGAACCAGAGGACTAGCTGACTTTTGCCAAGGAGCAGTGCCAACGGGCATGGCATGGTGCCCTGCCTGCCCCCGGGCGCCACCTCTGTACACTTCCCTGACACCTTCCCAGGTGTGGGTCACTGCCACCTGTGCCCATGGGCACCCCAGAGCACCCACTGTGACCACTGCAGTTCTCTCATGCCCACAGGCACTGGCCTGTGACCTTCGCAGGGGTCCCGGCCCCTCCCACCACTCTAGCCTTTCTCAGGCTGCACCAAAGATTCCATCATCAGGGCCAACTGAGAGTGAGGGAGTCTCACCCACCGCTTACCCCAGCCCTCCCCTGGGAGCAGAGAGAGAAACCCTCTTCATGGACCAGACTCTGCACCCGGTGAGTGAGGACAGTCCCAGCTGAGTCCCATCGATGTTGAATCTCATGCCACTGCAAGTGCCATTCACCACTGCGTCCTGGGCTTTACGAGACCATGCAAGACGGGGGTTAGTGAGGAAGGAGGATTTGGGGTGGGGGTGGGGTGATTGAATATTTGTATAAAAAGCAAAAAGAAAAAAAAAATGTTTGTTTACTGATTGGGGAGGGGCAATATTTATTTGTTGTAAATAGCAAATGCTAGACTTGAATATTATATTAAAATCCTGTTTCTACTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:17
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.402 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTATGAGCTGCTGCAGA
R:
GCGGGAGAGGTTCAGGATGAA
Band lengths:
351-1856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)