MmuINT0131349 @ mm10
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28550449-28553081:+
Coord C1 exon
chr2:28550449-28550563
Coord A exon
chr2:28550564-28552091
Coord C2 exon
chr2:28552092-28553081
Length
1528 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CCCTGTCCCTCTCCCACCAGAGC
3' ss Score
11.46
Exon sequences
Seq C1 exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGAAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCGGAGGATTATGAGCTGGTGCAGATCATCTCAGAGGATCACA
Seq A exon
GTAAGTCAGTCAACTGTAGGCCAGGGCTGAGGGGCGGCTCAGCACCGGCCCCTTCCCCAGAGCCTGCTGCTGGGCCTCTCCATAAGAGACAAGAGTTGAGGAGAGAGGCTCATGCGTGGGCCTGTCAGAGAGGACATTGCCTGGTTAAAATAAGAAAGCAGGTACTTCAGGAAGAATGCTCAGTTTAAAATCCACACACGAGAGGCTGGATGGCTCAGCGGTTCAGAGCGCTGGCTGCTCTTTCAGGGTACCCAGGTTCAGTTCCCAGCACCTACATGGCAGCTCATCACTGTAGCTTCATTTGCATAGATCTGGCACCTTCCTAGCCATACATGCAGGCTAAACACCAACACACACAAAATACAAATAAATACATCTTTAAAAAAAAATCCACACATGAGATGCAAAAAAGCGCACAGACGAGTCAGCATTCTAGAAAGAAGGATGGAGTCACAAGCCTGGGCTGGGGAGTCGGCTCAGTGGTTACAGTGTACAGTGTGCAGTGTACAGTGTACTGTGTGCTGGGCAGACAGCCTAGTGGTTACAGTGTACAGACTACTGTGTGCTGGACAGATGGCTCAGCAGTTAGAACTTGATGCTTTTCCAGAGGTCCTGAGTCAGTACCTAGTACCCACATGGTTACTTATAATCCCCTAAGTGTGTGCTGCTCTTGCAGAGGATCTGAGTTCAGTTCCCCCCTCTCAGCTTCTCCACAGCTGGCTGACAACCTCCTATGAGTCCAGTTGTACAGGATGTGATGCCCTCTTTGGGCCTCCATAGATGCATGAATGTAATTAAAAAGATAAATAGAAAAATCAGGCCATTCTCAAGGATCTTGGAGAATTTCAGGGGCTCTGTGCCTATGTCCTTTTCCCCAAAAGGAGGCTGTGGCCAGCAGCTTAATGTTAGAGAGAGACATCACCACAGAGGCCACCCATGTCTGTCACCACAGACACTGCTGAAGTGAGCTGAACACCCCCATCTCACCATTTGCTGCTGTCTGCAGTAACTCCCAAGATACCTAGATGTTCTACTGCAAACCTCCTCTCAGCTTCTCCACTGTTTTGGTTATATGGACAGGGTGAGGGGGCCCCTTCCTTCCAGAAGGCAGGCCTACAGAGGCTCAGGAACTAGAGGCAGACACGGGGTCAGCAGGAAGTCCCGCTTGGTAATGATGGACAGATTCTAGGCCAGAGGTGACTAGTGGAATGGAACCCAGAGGAAGGTTCTGCCCTCTGCTGGTCCTTGGAGCCTTGGTGAGTAGCAGTGGAGCATCATGGAAGGCAGTGTGGATTCCTGGAAACCTGCTCTGGCTGGAAGTCCTAGCCAGCAGAGAGAGCCGTAAAGGTGGTGTGGAGAGACTTCCTTAGGCTCTCATTGACCTCTACTGGGGTCGCAGGAGAGGTCCTTGTTGGAGCTGGATTGGAGGACTCCCAAGGCCCTGCTGTGGCCTGGCCGGGAGGAGGCTCTCAGGAGGTGGGGGCATCTCAGCCGCATAAAGCACCACTCCCTGTCCCTCTCCCACCAG
Seq C2 exon
AGCTGAAGATTCCAGAAAACGCCAATGTGTTCTATGCCATGAACTCTACCGCCAACTATGACTTCATCCTAAAGAAGCGGACCTTCACTAAGGGGGCTAAAGTCAAGCATGGAGCCAGCTCCACCCTCCCTCGTATGAAGCAGAAGGGACTCAGGATTGCCAAAGGCATCTTCTAAGGACGTCTCCTGGGACGGGCTGACTGGCTGGAGACTAAGCACTTACAGACTAGAGTGGCCCTGGCCACACAGGTACCTCTGCCCACCTGCCAGTCCAGGCTACCCCCCTACTCCACTTTCACCCTGAACCTCTCCTGCTGCCGGGATTGACACCTGCCACTGACAGGCTGACCTGGCCTCTGGGGACCACTTGCCGCCTTCGGTGCCTTCTGCTCTCTGAAACCAGAGGACTAGCTGACTTTTGCCAAGGAGTGTTGCCAACTGGGCATGGGACCTTGCCTGCCCTGGACACTATCCACCACACTTTGCTGACACCTCCCCAGGTGCAGATCACTGCCACCCATGCTCCCGGATGCTCCAGGACACACATACACCCAGCAGGGCTGCCGACTGCATTCTCTCCTTGTGCCCACAGGCACTGGCCTGGGACTTTCATGGAGGTCCTAGCCTTTCCTCCCACACTCTAGCCTTTCTCAGGCTGCACCAAAGATTCCACCTTCAGGGCCTACAGAGTGAGGGAGCCTCGCCCACCAGGAGCCCAAGCCCTCCCTTGGATCAGAGAGAGAAGCCCTCTCGTGAACTGCCCGGTTGGTATTGAATCCCAGTCCACTGAAAGTGCCATTGACCACCGCTGCATCCGGGCTGTACAAGACGACACGCAGTGGGAGGTTTGTGGGGAGGAGGAAGACAACTGAACATTTGTATAAAACGTAAAAAGTTTACTGATTGGGGTGGGACAATATTTATTTGTTGTAAATAGAAAATGCTAGACTTGAATATTATATTAAAATCCCGTTTCTACTACGGCCTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821:ENSMUST00000028170:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATTATGAGCTGGTGC
R:
AGGGTGAAAGTGGAGTAGGGG
Band lengths:
343-1871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types