GgaINT0125795 @ galGal3
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:906256-907630:+
Coord C1 exon
chr17:906256-906403
Coord A exon
chr17:906404-907335
Coord C2 exon
chr17:907336-907630
Length
932 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CCTCTGCTCCCCTCCCCAAGATA
3' ss Score
6.96
Exon sequences
Seq C1 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
Seq A exon
GTGAGTATGATGGGGTGGGGGGAGGAAGCTGCCTGTTGGCCTTGGCACCAGGGAGTTTGGGTTACAGCTGTGTGGGGGCTTTAGAGTGAATGGGAGGAGAAATTACTTTCTGCCCCAAGGGCAAACCTCTCTGCATCAGGCTGGGGTGAGGTGCTCTGTGTTAGGGCATGTGGCTGCCACTTACTGGCTGCACAAAGTGGTAAAAGAAAGAGGTCCGGAAGCAGCTGGGTCATCTCAGTCAAAAATGCTTTTTGGCTGGAGTTATCTGCGGGGACCCATTTGCATACCTGCACGTGGCTGCCATGACAGTGGTTACTTGTGATTCCTTGAGTGCTAGCAGTAAATTTCACCTTCTGGAAAACACAGTCTCCCATGGCCCTGCTGCCTTTATCCAGAGCTGGGAGCAGTTTCAGACCTTTGCTGCAAGTCCCTGGAGTGCTGCTGGTAGGAGGGCCCTGCGCCGGCCTGGAGCAGGGAGCCTACCCTGCCTCAGACACTTATCCCTGTGCTGATGAAAGGTGAATGTCTGAGCATCTCTCCTAATCCTGTCAGGAAACCTTTTCTCTGTGCTGCTGAGCTCAGTTCAGTGTAGAGGTCAGTCACAGAGTCATGGCAGAGTGAAGGAGCTGCCTGCAGTAATGCATTTCATTCCTGAGGCAGTGGGATAGGCTGCTGTCTTTGGTATTGATTTTAATGAGATAAAAGAGGCTCAGCCTAGTCTGTAGGGCCCTCCAGCTCTAACCCCTTCCTTTCTAAGGGAGGCAGAGAGCAGTTGAGCACTGTGCTGTGTTTCTGCCTGCGTTTCAGAGCTGCAGGCCTGCTAAGGATCAAGGTAACTGTGTGATCCCTGCTTTGCCTGTCTGTGTGAGGGGAGAGGGTTTTATGCTGTGGCTCCACAAGCGCGGGGTAACCCCTCTGCTCCCCTCCCCAAG
Seq C2 exon
ATACCTGTATGTGAACAGCCGTGCCTGGCCTCGGGACTGCGTCATCTTTGACCCCATGCAGCCACCCCCCATTGCTGAGGAGATCGATCTGCATGTGTTTGACTTGAAGACAATGAAGGAAGTGAAACGAGCCCTCCGTGCGCATCGGGCCTACACACCCAACGAGGAGTGTTTCTTCATCTTCCTGGATGTCAGCAGGGACTTCGTGGCAAGGTGTGTGGCACTGGGGGTGGGCAGGATGATGCCTGAGGTATGGGACGGCCTTGGGTGTTGCACTGTGGGCTGTTGTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCCATCAGATGACAAC
R:
CACGAAGTCCCTGCTGACATC
Band lengths:
343-1275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]