BtaINT0061647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106290228-106290660:+
Coord C1 exon
chr11:106290228-106290375
Coord A exon
chr11:106290376-106290447
Coord C2 exon
chr11:106290448-106290660
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGAACTGCGTGCCGGCGCAGGTA
3' ss Score
5.56
Exon sequences
Seq C1 exon
GCATCAAGCAGATCTTACCGCACCAGATGACCACAGCCGGGCCCGTTCTGGGCGAGGGCCGGGGCTCCGACGCCTTCTTCGATGCGCTGGACCACGTCATCGACGTGCACGGACATATCATCGGCATGGGCCTGTCCCCCGACAACAG
Seq A exon
GTGGGCCTCTGTGGGCAGCCCGGGGGCGGGGGGAAGCTCCGTGGGCGCGCACTGAACTGCGTGCCGGCGCAG
Seq C2 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCTAGCGGCTCGGTGGTGGCTGACCCCATGCAGCCGCCACCCATCGCCGAGGAGATCGACCTGCTGGTTTTCGATCTCAAGACCATGCGGGAGGTGAAGCGGGCTCTGCGCGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515:ENSBTAT00000013887:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCACGGACATATCATCG
R:
CTCCCGCATGGTCTTGAGATC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development