HsaINT0063060 @ hg19
Intron Retention
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:13613]
Coordinates
chr9:139835703-139836136:-
Coord C1 exon
chr9:139835989-139836136
Coord A exon
chr9:139835916-139835988
Coord C2 exon
chr9:139835703-139835915
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCACAGTGCCCCTCGCCCAGGTA
3' ss Score
2.87
Exon sequences
Seq C1 exon
GCATCAAGCAGATCCTGCCACACCAGATGACCACGGCAGGGCCCGTGCTGGGTGAGGGCCGGGGCTCCGATGCCTTCTTCGACGCGCTGGACCACGTCATAGACATACACGGACACATCATCGGCATGGGCCTGTCGCCCGACAACAG
Seq A exon
GTGGGCCTCTTGCCAGTGTCCCAGGCGGGGTGCCCGCAGGCGGCCCACACCTAGCACAGTGCCCCTCGCCCAG
Seq C2 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCCAACGGTGCGGTGGTGGCCGACCCCATGCAGCCGCCACCAATCGCGGAGGAGATTGACCTGCTGGTGTTCGACCTCAAGACCATGCGGGAGGTGAGGCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069-FBXW5:NM_018998:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGATGCCTTCTTCGACG
R:
GTCAATCTCCTCCGCGATTGG
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)