RnoINT0060109 @ rn6
Intron Retention
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2729964-2730405:+
Coord C1 exon
chr3:2729964-2730111
Coord A exon
chr3:2730112-2730192
Coord C2 exon
chr3:2730193-2730405
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AACATGTGCCCCTTGCCCAGGTA
3' ss Score
6.17
Exon sequences
Seq C1 exon
GCATCAAGCAGATCCTGCCGCACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCCGATAACAG
Seq A exon
GTGGGCCCGGTGAGCTGGGGGCAGCACATACAGCCCTGTGTCCAATAGCTGGCTTGCACCTAACATGTGCCCCTTGCCCAG
Seq C2 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTCGCCGACCCCATGCAGCCACCACCCATTGCAGAGGAGATTGACTTGCTGGTGTTTGATCTGAAGACCATGCGGGAGGTGAAGCGAGCTCTGCGAGCACACCGTGCCTACACACCCAATGATGAGTGCTTCTTCATCTTTCTGGATGTCAGCAGGGATTTTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674:ENSRNOT00000034089:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGCCTTCTTTGATGCCC
R:
ATCTCCTCTGCAATGGGTGGT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]