MmuINT0063578 @ mm9
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25359700-25360149:+
Coord C1 exon
chr2:25359700-25359847
Coord A exon
chr2:25359848-25359936
Coord C2 exon
chr2:25359937-25360149
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTATGCTATCCCTTGCTCAGGTA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GCATCAAGCAGATCCTGCCACACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCTGATAACAG
Seq A exon
GTGGGCCTGGTGAGCCAGGTGGGGCACCACAGCTGGCCCTGTATCTAATAGCATGCTTGTACCTAAGATGTATGCTATCCCTTGCTCAG
Seq C2 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTAGCCGACCCCATGCAGCCACCACCCATTGCGGAGGAGATTGACTTGCTGGTGTTTGATCTCAAGACCATGCGAGAGGTGAAGCGAGCTCTTCGAGCGCACCGTGCCTACACACCCAATGACGAGTGCTTCTTCATCTTCTTGGATGTCAGCAGGGATTTTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-Fbxw5:NM_013908:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTTCTTTGATGCCCTGG
R:
GCAAGTCAATCTCCTCCGCAA
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: