GgaINT1013177 @ galGal4
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:525553-526845:+
Coord C1 exon
chr17:525553-525700
Coord A exon
chr17:525701-526632
Coord C2 exon
chr17:526633-526845
Length
932 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CCTCTGCTCCCCTCCCCAAGATA
3' ss Score
6.96
Exon sequences
Seq C1 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
Seq A exon
GTGAGTATGATGGGGTGGGGGGAGGAAGCTGCCTGTTGGCCTTGGCACCAGGGAGTTTGGGTTACAGCTGTGTGGGGGCTTTAGAGTGAATGGGAGGAGAAATTACTTTCTGCCCCAAGGGCAAACCTCTCTGCATCAGGCTGGGGTGAGGTGCTCTGTGTTAGGGCATGTGGCTGCCACTTACTGGCTGCACAAAGTGGTAAAAGAAAGAGGTCCGGAAGCAGCTGGGTCATCTCAGTCAAAAATGCTTTTTGGCTGGAGTTATCTGCGGGGACCCATTTGCATACCTGCACGTGGCTGCCATGACAGTGGTTACTTGTGATTCCTTGAGTGCTAGCAGTAAATTTCACCTTCTGGAAAACACAGTCTCCCATGGCCCTGCTGCCTTTATCCAGAGCTGGGAGCAGTTTCAGACCTTTGCTGCAAGTCCCTGGAGTGCTGCTGGTAGGAGGGCCCTGCGCCGGCCTGGAGCAGGGAGCCTACCCTGCCTCAGACACTTATCCCTGTGCTGATGAAAGGTGAATGTCTGAGCATCTCTCCTAATCCTGTCAGGAAACCTTTTCTCTGTGCTGCTGAGCTCAGTTCAGTGTAGAGGTCAGTCACAGAGTCATGGCAGAGTGAAGGAGCTGCCTGCAGTAATGCATTTCATTCCTGAGGCAGTGGGATAGGCTGCTGTCTTTGGTATTGATTTTAATGAGATAAAAGAGGCTCAGCCTAGTCTGTAGGGCCCTCCAGCTCTAACCCCTTCCTTTCTAAGGGAGGCAGAGAGCAGTTGAGCACTGTGCTGTGTTTCTGCCTGCGTTTCAGAGCTGCAGGCCTGCTAAGGATCAAGGTAACTGTGTGATCCCTGCTTTGCCTGTCTGTGTGAGGGGAGAGGGTTTTATGCTGTGGCTCCACAAGCGCGGGGTAACCCCTCTGCTCCCCTCCCCAAG
Seq C2 exon
ATACCTGTATGTGAACAGCCGTGCCTGGCCTCGGGACTGCGTCATCTCTGACCCCATGCAGCCACCCCCCATTGCTGAGGAGATCGATCTGCATGTGTTTGACTTGAAGACAATGAAGGAAGTGAAACGAGCCCTCCGTGCGCATCGGGCCTACACACCCAACGAGGAGTGTTTCTTCATCTTCCTGGATGTCAGCAGGGACTTCGTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCCATCAGATGACAAC
R:
CACGAAGTCCCTGCTGACATC
Band lengths:
343-1275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]