GgaINT0126076 @ galGal4
Intron Retention
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1021460-1026580:-
Coord C1 exon
chr17:1026404-1026580
Coord A exon
chr17:1021561-1026403
Coord C2 exon
chr17:1021460-1021560
Length
4843 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTGCTCACACTAATCGCAGGCT
3' ss Score
6.22
Exon sequences
Seq C1 exon
AGCATCCACCTGTCCTTTTTGCGCACGGTCCCACCATACTCTCACCAGGCCAACGTCTGGTTTGAGATGATGAGAGTCTTCAACTGGAATCACGTCATTCTGATAGTCAGCGACGACCACGAGGGTCGTGCTGCACAAAAGAAGCTGGAGACCCTCTTGGAGGAGAGAGAGTCCAAG
Seq A exon
GTCAGTTCCTGAACATTGTCTTGTAGCTTTGTTTAAGCAACAACAACAAAACTAGAAGTCTCGGGCTGTTGTATGTATGTAGATTTCTGTATGTAAAACACCTTTTCTTTCCATTGTAACATGGCTAACATGCTTAAAGCATCAACAGTGTCTGACTAGTACCTGACAGAACTTTGTACTTTATTCATTTCACTTGCTTTGCCATGGTCAAAATCTCCTACATGTAAATCGACTACAAAATGAAGGGAAGGATAACCTGGAGCTCTGCAAATGCCTCGCCCAAGAGTCCCACCTAAGGAGAGGACCAATCGCTCAGCTTAGGGAAGCACCTGCCCCACTTACAGCCCATCCAGCAGTGCCAAACCAACCCAGAAAGCAGCTTCTGAATTGGCAAACTGGAGCTCACCTTAGCTGTAGGAGGGTGAGGGCGGCCGGCGCGTTGACGCGTGGAGGTGTCACGCACCCTCTCTATAAAGCTGTCGGCTCCAAGGCACTAGGCTGGTGCCCGTTCCCATCTCCATTGAAGCACACGCTAAACACTGCTTTCCTGACACCCCATACTGTCACCAGGGTGTGGTTGAGGCTCGTGGGAGCAGCTTTATCGAGGAGGTGTGCGGCATCTGCATCCAGGGCATGTGGGGAGCAGGGAGAAAGGCAGGGGAGGACCCCAAGCCTGCCAGAAATCTGGCAGGGATGTCCACAGACCTGAGTGATGGGACCAAGCAAGCGTTCAAGATGAGCAGGAAAGGACAGCACAGAGAGCTGGTTGGCTGCAGTGGTTCAAAGGCAGCCACCTACCTGGAAAGCAAGGAGCAGCCTGCCCCGAGGGGTGAAGTTCCAGCATGTCATCTGGCCTGAAGCAGTGCTAGGTCCTCTTCAGGTGGAGCCCACCTCCAGTAGCCTCAGCACTTGGCACCATTTCTTCCATCTTCCTCCTGGATCATAGGCAGGGACCCAGTCTGCTCTTTTCCAGTCCTGTGACTGCTGGATGTTTGGCAGTCAGATGCCAAGGAGATGTGGTTGTAGATGCATCTTGTGCTTGGAGTTGGCATCCGAGTCGAGAGCAGCCACCTCTTGTCAAGCCACTGAAGGAACCACTGGTGCAGAGGTCCATACTGACCAACAGGCTTTTGGTTTTGGCGCTTGACTCCAAGAAGTTTCACCCTTGCTGCAGCCTGAGGAATCATGAGCCACTGGTGTGCCACTGAGCATGGCATCCTCCTGCCTCCAAAGGCATCTTTCTGTTGGGTCAAAACAGGACCACGTTCCTCCCCAACACCTCTTTCCACAGCAGTGTCCAAGAGATATCTGTAGAAGTGTTGTTCCTGTTGTAAGTCTGCTCTCCCTTATCTTGCATCTTTTGCTTTCTACCTGCTGTTTTCCTGCAGCTCCCATGCGTTGTTTTCTGCTCCCTCTGATGCCTGCACTCTTCTCATCCAGTTCCGTGCTTCCAGGCAAGAGGTGAATTTCTTCTTTACCTGCCCATCAAACAGGAAAGCCTTTGAGATCTTAGTTTGAAAGACAGGGCAGACCTGCCCTGCATCTGAATCTATGACATGTATTGGTGTCTTGTGGCAGCTATGGAGCTACTCCAGATGTCCCGGCCATCCGCCAGACTGAGACTTGTGCTCTGAGTTTATAGGTCACCACGCCTTCCCTTTGGGGTCTGCCACAAACTCTCATTTCTCTTTCCCTTAAAGAACTTGCTGTGACCAACTGGCTGGCCTGGCTGCTCTGGAAGGTGGTAGCTATTCCTATCAGGGCGTTCCCTTCTTCCTCAGTCTCTTCTGCTGCCTCGTTGCTCTTCTAATCACTGGTGTGCTCACTTTATGCTGTGAGGTGATGTCATAGATCCCTCTCTAACCTCCTCTGGGACAGCTGGGACCCTGGGGGGAGTAGGCAGGAGAGCAGCTCTGACTTCTTCAAGGCTTGACTCACAGCTGCCAAGGACCTGAGAGATTTGCCTCACCTGGATTCTACCATGGCTTGTCTCCTGGAGTCAGCATCAGGACGTGGTGTTCCTCAGACATGGATTAATGCTTCAAGCAGCTGCTTGGAGCCCAGCATTGGCCAGCCCTGGTACTCTGCATGTGCTAAACTTGCCTGAGATGTCTGCAGAAACTTCCCCAGGCTCTGCTGCTTCATCCTGAGTGGTACAGCTCAGATACCCACTGACCTCCACCACTGCTTGGGCTCAGCTTGGATACAAGATGCTGTGAACGTCAGAGTCTGTCCAGGTCAGAGATGGCAGGTCCCTGGTGTGGCAGCTCCCTTCCTCTGAGACCACGGTGTTCATGCAAGCAGTAATTTTTAAGCTGATATTGGAGAATGTGGAGAGTGGATTTTGATATTGTGGATCCCTATGTGAAACATGGGCTGAGGAGTAGGGAGATGCTGTGGAACCACACCAAAAATTGGAAAGAGAAGAGACATTGCCATTGCTGGTCACTACATTAGAGATGGGGACAGGGGGAGGCAGAAGTGATTGGATGCCATTAGGTGCAATTGTGTTGGGCCCAGGACTCTGCTTCACTTTGCTGACCGGCTCCAGTTGAGGTGCCAGAACACCCCAGGCACATGAATTCAATCACATCTGGAGGCTGCAGAATGGATGACCAGGTTTCCAGTCAAACTGATGGTGCCTGAAGGAAAACAGCCAATGTCTTTCCTCTGGAGAGTGTTCATGCTGTCCTGCTGCAGCCCTGCTCTCCTCAAAGGCAGTGTTCCTCCGAGTCTCACTGTGATCTGAGCAGACTCAAAGAAGAACATGCAGAAATTCCCACCATGAGCATCACCAAGAATGAAGGTGGAGTGGGGCTTGGAACACATTTTTCCTCCTCAGATTCTTTTCCCTGCAAGATCCCGACTTCTTAGAATAGTGAAAAGTGTCCAAGGAGAGGAATGGAAAAATCACACAACTGCGCAGACAGGAGAGCTGGCAAATATAAAGATTGGACAGAGAGCTCAGGAAGAAGCAAGCTGTTTAGTGTGGAAAGCAAGATGCAGAAGCAGAGGCTGGGTGCCTCAGGATCGGCCTGAGAAATGGAACCCTGGCACTACAGGGGTGCAAAGGGTCGGGTTCCTGGCAGAAATCAGTTGCCATAAGATGCTGCACAATGGAGATTGGAGTAGAGCAGTGTCCCATACATGCAGGTCAGGGCTGCCCAGATGGGTGGGAAGGGGCCGAGAAGAAGGGGTCAGACTGTCCCACCAAAAGCTGCCAAGAGCTGTCCTGCAGGTGCTCTCAGGTTGTCACTGACAGAACCACAAGATGATGCATGGGGACAGGTCCCCAGTCCCCAGCACCTCCCGAGGTCACCCATGTGCTGCAAAGCCACCCGGTGCCTCCTGAGCACCAAGTAACAGCCACAGTGTCATCCCATGGTCACCATTGCTTCATATTGCCATGCTTTGAGCCAACACAGGACTAGCGAGCTTTTTTTCCTTTCTCTTTTGGATGGCAACTGAGCTCCAAAACGCTGCTCCCTCCTTGCAGGAGGTGAAGCTCAGCTCCTCACTTGCTGTGAACTCTCTTAGGGCAAACAGGATTGTAATGGTAATAGTAACGGTAGCAATGCTAATGCTATTGATTGTAACAGCTTGTGTTTATCCAGCACTTTCCGTACACAACATTTTGTCCTTTACTTCCACAGTAATCCCATGGAATTCCCACCACTTAGGCCCTTAGAGATGCGTAGATTGTTTCTGAGCTTAAGATAAAAATTTCTTGCTGAAGAATTCCCCAGTCCCACAAGGGAAATGCAACTGCATCGCGACAGCTGTGACACTCAGGCTTGCTTTGCACCGTGACGCTCCCGCGAGAGCTGAGGCACTCTCTCCTGATAGTGGTTTTTGCGAGCTCCAGCGTTATAGAGACCCTTTAGCAAACAGTGGAGGAGGAGGTGGATGTTGGATTGCTTTACTACACGTCATTTTCAACTGTTTATAATATTCTTCTGTGTCTACATATTTTCTCTGTGCACATTATTCATCAGAGTAAAAAAAGGAACTATGAAAACCTCGACCAACTTTCCTATGACAACAAGCGAGGACCCAAGGTATATATGCATGGAAATGCACGCCGCCCACCAACCTAACTAGCAAATGAAAAATAGCCACAGCCACCAGAAAAAATAAAAATAAAATAAAAAGAAAAAAGAGAAAGAGAAAAAAGAAAAGAGAAAGAAAGAAAAAAGATCCATGACTATGTTTCTTGGTAGCACGTTTTTATGTTGAGATAGTTTGGTTTGGACTTGAGAATGGAAACCTAGCCAGCTGACCCTGGAAGGATTTCTTTTTGAGACATGCATGTGAACCAGTAATTAACTTGCAAGTTTTTTTTGTTGTTGTTTTTTTTTTTGGAAAGTTGAACCAACCCCCTTTCCTCCCCAAAGGAAATGGTTCCTTGGTGTAAGTCGTTCACTTTTACTCCCAAAGGTTAACCCTGTGCAATGTTTTTTTTTCATTTCCCATGTTTTTGAAAAACAACACTCGTTTGAGTTTTCAATTGCATTTCAAAGCCTTTTTCTCTTTCCTGTACAATGCACGCCTCTTTTTGGGTCTTGATTGACTTCAGTTTGCATGCACAGTGCAAAAAAAACCAAAAAAAAACCAAAAAAAAAAAAAAAAACCAAAACCTTAAAAGAGAAAGGAAGGAAGGAAAGAAAGAAAAGAAAGAAAAGAAAAGCAAAGAAAATAAGAAAAAAACCTAGCTGTAACCAATCTTATTTAGCAGACTTTTGTGCAGTTTAATGAATTTTCTTGACCCTTTTCTAGATAGTATGGCTCTCACAAGCAGTCCTCAGTCTCCCACACTAACCAGCTTTGCTCACACTAATCGCAG
Seq C2 exon
GCTGAGAAAGTGCTGCAGTTTGACCCCGGGACCAAAAATGTGACGTCGCTGCTGCTGGAGGCTAAAGAGCTGGAGGCTCGCGTCATCATCCTCTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898:ENSGALT00000040369:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(18.2=100)
A:
NA
C2:
PF0109423=ANF_receptor=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]