GgaINT0126076 @ galGal3
Intron Retention
Gene
ENSGALG00000008898 | Q6R6I2_CHICK
Description
NA
Coordinates
chr17:1413371-1417605:-
Coord C1 exon
chr17:1417429-1417605
Coord A exon
chr17:1413434-1417428
Coord C2 exon
chr17:1413371-1413433
Length
3995 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTGTGCACATTATTCATCAGAGT
3' ss Score
5.24
Exon sequences
Seq C1 exon
AGCATCCACCTGTCCTTTTTGCGCACGGTCCCACCATACTCTCACCAGGCCAACGTCTGGTTTGAGATGATGAGAGTCTTCAACTGGAATCACGTCATTCTGATAGTCAGCGACGACCACGAGGGTCGTGCTGCACAAAAGAAGCTGGAGACCCTCTTGGAGGAGAGAGAGTCCAAG
Seq A exon
GTCAGTTCCTGAACATTGTCTTGTAGCTTTGTTTAAGCAACAACAACAAAACTAGAAGTCTCGGGCTGTTGTATGTATGTAGATTTCTGTATGTAAAACACCTTTTCTTTCCATTGTAACATGGCTAACATGCTTAAAGCATCAACAGTGTCTGACTAGTACCTGACAGAACTTTGTACTTTATTCATTTCACTTGCTTTGCCATGGTCAAAATCTCCTACATGTAAATCGACTACAAAATGAAGGGAAGGATAACCTGGAGCTCTGCAAATGCCTCGCCCAAGAGTCCCACCTAAGGAGAGGACCAATCGCTCAGCTTAGGGAAGCACCTGCCCCACTTACAGCCCATCCAGCAGTGCCAAACCAACCCAGAAAGCAGCTTCTGAATTGGCAAACTGGAGCTCACCTTAGCTGTAGGAGGGTGAGGGCGGCCGGCGCGTTGACGCGTGGAGGTGTCACGCACCCTCTCTATAAAGCTGTCGGCTCCAAGGCACTAGGCTGGTGCCCGTTCCCATCTCCATTGAAGCACACGCTAAACACTGCTTTCCTGACACCCCATACTGTCACCAGGGTGTGGTTGAGGCTCGTGGGAGCAGCTTTATCGAGGAGGTGTGCGGCATCTGCATCCAGGGCATGTGGGGAGCAGGGAGAAAGGCAGGGGAGGACCCCAAGCCTGCCAGAAATCTGGCAGGGATGTCCACAGACCTGAGTGATGGGACCAAGCAAGCGTTCAAGATGAGCAGGAAAGGACAGCACAGAGAGCTGGTTGGCTGCAGTGGTTCAAAGGCAGCCACCTACCTGGAAAGCAAGGAGCAGCCTGCCCCGAGGGGTGAAGTTCCAGCATGTCATCTGGCCTGAAGCAGTGCTAGGTCCTCTTCAGGTGGAGCCCACCTCCAGTAGCCTCAGCACTTGGCACCATTTCTTCCATCTTCCTCCTGGATCATAGGCAGGGACCCAGTCTGCTCTTTTCCAGTCCTGTGACTGCTGGATGTTTGGCAGTCAGATGCCAAGGAGATGTGGTTGTAGATGCATCTTGTGCTTGGAGTTGGCATCCGAGTCGAGAGCAGCCACCTCTTGTCAAGCCACTGAAGGAACCACTGGTGCAGAGGTCCATACTGACCAACAGGCTTTTGGTTTTGGCGCTTGACTCCAAGAAGTTTCACCCTTGCTGCAGCCTGAGGAATCATGAGCCACTGGTGTGCCACTGAGCATGGCATCCTCCTGCCTCCAAAGGCATCTTTCTGTTGGGTCAAAACAGGACCACGTTCCTCCCCAACACCTCTTTCCACAGCAGTGTCCAAGAGATATCTGTAGAAGTGTTGTTCCTGTTGTAAGTCTGCTCTCCCTTATCTTGCATCTTTTGCTTTCTACCTGCTGTTTTCCTGCAGCTCCCATGCGTTGTTTTCTGCTCCCTCTGATGCCTGCACTCTTCTCATCCAGTTCCGTGCTTCCAGGCAAGAGGTGAATTTCTTCTTTACCTGCCCATCAAACAGGAAAGCCTTTGAGATCTTAGTTTGAAAGACAGGGCAGACCTGCCCTGCATCTGAATCTATGACATGTATTGGTGTCTTGTGGCAGCTATGGAGCTACTCCAGATGTCCCGGCCATCCGCCAGACTGAGACTTGTGCTCTGAGTTTATAGGTCACCACGCCTTCCCTTTGGGGTCTGCCACAAACTCTCATTTCTCTTTCCCTTAAAGAACTTGCTGTGACCAACTGGCTGGCCTGGCTGCTCTGGAAGGTGGTAGCTATTCCTATCAGGGCGTTCCCTTCTTCCTCAGTCTCTTCTGCTGCCTCGTTGCTCTTCTAATCACTGGTGTGCTCACTTTATGCTGTGAGGTGATGTCATAGATCCCTCTCTAACCTCCTCTGGGACAGCTGGGACCCTGGGGGGAGTAGGCAGGAGAGCAGCTCTGACTTCTTCAAGGCTTGACTCACAGCTGCCAAGGACCTGAGAGATTTGCCTCACCTGGATTCTACCATGGCTTGTCTCCTGGAGTCAGCATCAGGACGTGGTGTTCCTCAGACATGGATTAATGCTTCAAGCAGCTGCTTGGAGCCCAGCATTGGCCAGCCCTGGTACTCTGCATGTGCTAAACTTGCCTGAGATGTCTGCAGAAACTTCCCCAGGCTCTGCTGCTTCATCCTGAGTGGTACAGCTCAGATACCCACTGACCTCCACCACTGCTTGGGCTCAGCTTGGATACAAGATGCTGTGAACGTCAGAGTCTGTCCAGGTCAGAGATGGCAGGTCCCTGGTGTGGCAGCTCCCTTCCTCTGAGACCACGGTGTTCATGCAAGCAGTAATTTTTAAGCTGATATTGGAGAATGTGGAGAGTGGATTTTGATATTGTGGATCCCTATGTGAAACATGGGCTGAGGAGTAGGGAGATGCTGTGGAACCACACCAAAAATTGGAAAGAGAAGAGACATTGCCATTGCTGGTCACTACATTAGAGATGGGGACAGGGGGAGGCAGAAGTGATTGGATGCCATTAGGTGCAATTGTGTTGGGCCCAGGACTCTGCTTCACTTTGCTGACCGGCTCCAGTTGAGGTGCCAGAACACCCCAGGCACATGAATTCAATCACATCTGGAGGCTGCAGAATGGATGACCAGGTTTCCAGTCAAACTGATGGTGCCTGAAGGAAAACAGCCAATGTCTTTCCTCTGGAGAGTGTTCATGCTGTCCTGCTGCAGCCCTGCTCTCCTCAAAGGCAGTGTTCCTCCGAGTCTCACTGTGATCTGAGCAGACTCAAAGAAGAACATGCAGAAATTCCCACCATGAGCATCACCAAGAATGAAGGTGGAGTGGGGCTTGGAACACATTTTTCCTCCTCAGATTCTTTTCCCTGCAAGATCCCGACTTCTTAGAATAGTGAAAAGTGTCCAAGGAGAGGAATGGAAAAATCACACAACTGCGCAGACAGGAGAGCTGGCAAATATAAAGATTGGACAGAGAGCTCAGGAAGAAGCAAGCTGTTTAGTGTGGAAAGCAAGATGCAGAAGCAGAGGCTGGGTGCCTCAGGATCGGCCTGAGAAATGGAACCCTGGCACTACAGGGGTGCAAAGGGTCGGGTTCCTGGCAGAAATCAGTTGCCATAAGATGCTGCACAATGGAGATTGGAGTAGAGCAGTGTCCCATACATGCAGGTCAGGGCTGCCCAGATGGGTGGGAAGGGGCCGAGAAGAAGGGGTCAGACTGTCCCACCAAAAGCTGCCAAGAGCTGTCCTGCAGGTGCTCTCAGGTTGTCACTGACAGAACCACAAGATGATGCATGGGGACAGGTCCCCAGTCCCCAGCACCTCCCGAGGTCACCCATGTGCTGCAAAGCCACCCGGTGCCTCCTGAGCACCAAGTAACAGCCACAGTGTCATCCCATGGTCACCATTGCTTCATATTGCCATGCTTTGAGCCAACACAGGACTAGCGAGCTTTTTTTCCTTTCTCTTTTGGATGGCAACTGAGCTCCAAAACGCTGCTCCCTCCTTGCAGGAGGTGAAGCTCAGCTCCTCACTTGCTGTGAACTCTCTTAGGGCAAACAGGATTGTAATGGTAATAGTAACGGTAGCAATGCTAATGCTATTGATTGTAACAGCTTGTGTTTATCCAGCACTTTCCGTACACAACATTTTGTCCTTTACTTCCACAGTAATCCCATGGAATTCCCACCACTTAGGCCCTTAGAGATGCGTAGATTGTTTCTGAGCTTAAGATAAAAATTTCTTGCTGAAGAATTCCCCAGTCCCACAAGGGAAATGCAACTGCATCGCGACAGCTGTGACACTCAGGCTTGCTTTGCACCGTGACGCTCCCGCGAGAGCTGAGGCACTCTCTCCTGATAGTGGTTTTTGCGAGCTCCAGCGTTATAGAGACCCTTTAGCAAACAGTGGAGGAGGAGGTGGATGTTGGATTGCTTTACTACACGTCATTTTCAACTGTTTATAATATTCTTCTGTGTCTACATATTTTCTCTGTGCACATTATTCATCAG
Seq C2 exon
AGTAAAAAAAGGAACTATGAAAACCTCGACCAACTTTCCTATGACAACAAGCGAGGACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898:ENSGALT00000040370:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(21.0=100)
A:
NA
C2:
PF0109423=ANF_receptor=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]