MmuINT0073998 @ mm9
Intron Retention
Gene
ENSMUSG00000026959 | Grin1
Description
glutamate receptor, ionotropic, NMDA1 (zeta 1) [Source:MGI Symbol;Acc:MGI:95819]
Coordinates
chr2:25166863-25169124:-
Coord C1 exon
chr2:25168948-25169124
Coord A exon
chr2:25166926-25168947
Coord C2 exon
chr2:25166863-25166925
Length
2022 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGTGCACATTATTCATCAGAGT
3' ss Score
5.24
Exon sequences
Seq C1 exon
AGCATCCACCTGAGCTTCCTTCGCACCGTACCACCCTACTCCCACCAGTCCAGCGTCTGGTTTGAGATGATGCGCGTCTACAACTGGAACCATATCATCCTGCTGGTCAGCGATGACCACGAGGGCCGGGCAGCGCAGAAGCGCCTGGAGACGTTGCTGGAGGAGCGTGAGTCCAAG
Seq A exon
GTGAGGCCCTAGCCCTGAAGAGGTCCTTGTCCAGCAGGAGCAGGCGGGCCATGCCATGTCTGTGGCTCCTTGTGAACACTCTCTTTCCATCCTGCATGCTCAGCACCACTGCGTCTGGCGGCGCCCGCCCCGGCCTGTCCTCGGCTCATTTCACTTGCTTTTGCCATTAGTCGAAATCTCCTTCGTGTCAGTCCCTGCTGCGCGAGGGCTGGACCACCTGGAGCTCTGCAAACACCCCTGTCCCGCCCCCCACCAGCCTCAGGCCTCCCTGGCCCCAGCTTAGACTCAGCTCAGGACCTTCCCAGCCCCTCTCTGCCAGATGCCAAGTCCCATCTACCTTTCAGGAACACCGTCTACAGTCTCCTCCTCAGAGCACTGGATACAATCCATGCCCTCACAGAAACCACATCTTCTAAAAGCCTCATGTCTCATGGCTGCCCATGGCCCTAATTGAAGCCCCACTCATCTGCAGCCCCATCTCCACCTCGGCTACTCAGGCTCACACTGTGTCCCTACCTCCCTCCCACCTCAGGGCTTAGCTCTGCATCCCTCAAGGGACTATGTAGACACCGATCTCAGGATACACATACACTTCCATCTCAGCCTGGTCCCCAGTGTGTGGAACTGCCAGAGACCAGAGCTAGGATTTGAGGTAGAGGGGGTCAAAGTGACCCCTATGCCCTTCCTTGCCAACACCCATGTCGGCCTAATAAGGACCTGGCCCAGGACCCCCCTCAGTTCCAGGACACAGAGCACCAAGAAGCAGCTGGTTGGTGCTTTTCAGGTAGCAGAGAGGAGGAGGCTCAGGCTGGGGAGGGGCCCCAAAAGACAGATGGGGGAGGGGATGGGAGGGAGCATGTTTTGCCTGCAAAATCATAGCTGGCCTCATCATACTTAGCACCAACCATTGTCCCCACACCCAAGGTGCCATAGGCCTCTGGGGGGGGGAGGGAGTAGAGGGCATGGGTCGGGGTGGGAGTTGAGGATAGAGACAGGCCCAGGGTGAATCTTTTAGGGTGATCCATTGAGTCTGGGAAGGAGGACTGGTTATTAGCACCAAGGGCTCCGCCTCTCTGCAGATAGTTCCACTCTCAGCATCTGGCAGGTTCCTTCATACTTCTGCTGTGTCCGTCAAAGCCACACATACTATCAACCTACCCACATGTTCATCAGCCTGACCCCTGCACAATCAGCCACCTGCTCACAGACCCACAAGCACGCACGCACACATGCACGCACACACAGAGTTATTCAGTTCTTGGATATTTTAGTGGCACACCACACCTTTTGGAAAGACAGACCTCAGTCATCTCCGTGCATTTCTGAGCTGCACAAGAGGATCATATACAAGTGCTTCCTCTGTGACCCAGCTCACCCTCACTTGTAACCACAAGCTTAAACACATATTCACGTACACGTGCACACACACATGCTTAGACTATACTGCCTGCCCTTGCATCACTGACTGTCATAGATTTACCTTCTGTGGCAGGAGCATATCACCTCTGTAGGCATACAGATACACAACCAGTCTCAGACATTATTGTGGGCATTTGGGTGTGAGCATTCCGGTCAGTGAGAATGAGGAGGGCGGAGAAGGGGAAGGAGTGGGAGGGTCATAGAGACAGGGCCCTGCAGGCTGCTCCTCTTTCACTAAGAACTAATGTGGGTGTGGGTGGGTACTGCTGGGGCCACACAGCAGGTGCATGACAGGGGTGGGGGTGGCTTGCGGGAACCTCAAGGGTGGTGTGGACAGGGCTGCCCTCTCTTCTGAAAAAGACTTTCCAAGAGTATAGCTCCAAGGCAGGGAGCCTCTGTGGCCCTTGCCCCTGTGTCCCCTCCCCCCTCAGCTCCACCCCCGTCCTTAGCCCCACCCCGGGTCTCGGTGTTTGCGAGCTCCAGGTACGTGCCCGTCTGCAGACGTGCCGAGGAGGTGGTGTGATTGCTTTAGCGCCGTCATTTTCAACCGTTTATAATCTTCTTCTGTGTCTGCATATTTTCTCTGTGCACATTATTCATCAG
Seq C2 exon
AGTAAAAAAAGGAACTATGAAAACCTCGACCAACTGTCCTATGACAACAAGCGCGGACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026959-Grin1:NM_001177656:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(18.1=100)
A:
NA
C2:
PF0109423=ANF_receptor=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: