RnoINT0067647 @ rn6
Intron Retention
Gene
ENSRNOG00000011726 | Grin1
Description
glutamate ionotropic receptor NMDA type subunit 1 [Source:RGD Symbol;Acc:2736]
Coordinates
chr3:2525992-2527098:-
Coord C1 exon
chr3:2527036-2527098
Coord A exon
chr3:2526093-2527035
Coord C2 exon
chr3:2525992-2526092
Length
943 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGCTCCTGCTCACACCACAGGCA
3' ss Score
6.86
Exon sequences
Seq C1 exon
AGTAAAAAAAGGAACTATGAAAACCTCGACCAACTGTCCTATGACAACAAGCGCGGACCCAAG
Seq A exon
GTATATATGCATGGACGTGCACGCCACCCACCGACTAGCGAGCCCCGGCCTGCGGTGCCTCAGCCACTGGGTGCTTTCTGGCCCCACCGCGCCGAGCCGAGCCGCAGGCCTGAGCAGTGAGGAGAGACAGGTGGTGAGGCAGGCAGCAGGCAGGCAGCAGAGGGCAGGGGTGAGCGGTGTGGGTGCCCATAGCCCACCCGCCGTGACCCTGGCCCGCATCCACAAGACAAGCACGGTCACAGGAGGCGCTGCTCTGGGAAGTGCATGAATCTCCAGGTCCGCCAGGGTTTCCTAGTGGAACCCAGGGAGGGAGCCTGCCCACCTGGTCACTTCAGAGTTTGGGCCGCTCCTATAGGAGCAAGAGGAATCAGGTCTGAGCTGAGATCTCCCAAGGTTTTGGAAAAGTCAGCCCCATCTCTGTTCCCAGTTGCATTCCAAAACTTTTCTATTTCCTGTTCGCTGCACGTCTCTTTCTAAGTCTCGGTCCACTTCAGCTTGCATGCTCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAGAAAAAAAGAAAAGAAAAAGAAAGAAAGAAAGAAAGAAAAGAAAACCAAAAAGCAAAAACAAAAGCAAAAACAAAAAACAACCAAAATCAAAACAAAAACAAAAAACGAGGACAGGAGTCAGATGGAAAGAGAGACCTGGAGAAGGCAGACTGAGAAAAGAGCAGAGCTTGAGAACAGGACATCCAGCAGGCTGAAGAAGAGACAGACAGCAAGGACAGGCCAGCGCAGAGTGAGGAGGCAGGCTCACAGGGTAGGTGGCAAGGACAGGCCAAGGCAGCTCTAGTGAAGCTGCCTCGGGGCTCCTAGCAGCTTTGGCCCCACTCTTGCCACTGAGGCACAATGTTCCCTTTCCCAACTGCCTGCTAATGCTCCTGCTCACACCACAG
Seq C2 exon
GCAGAGAAGGTGCTGCAGTTTGACCCAGGAACCAAGAATGTGACGGCTCTGCTGATGGAGGCCCGGGAACTGGAGGCCCGGGTCATCATCCTTTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011726:ENSRNOT00000037725:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(5.9=100)
A:
NA
C2:
PF0109423=ANF_receptor=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]