GgaINT0126216 @ galGal3
Intron Retention
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9579817-9582445:+
Coord C1 exon
chr17:9579817-9579945
Coord A exon
chr17:9579946-9582352
Coord C2 exon
chr17:9582353-9582445
Length
2407 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATAGGCTGCTTTAATTTAGATT
3' ss Score
4.44
Exon sequences
Seq C1 exon
ACTACCAAGGATGACTTGTTACTGACCGACTTCGAAGGGGCTTTAAAGTTCTTCCGTGTACAGCTGCCCAAGAGGTACCGCTCAGAGGAGAATGCAAAAAAGCTGATGGAGTTAGCCTGTAACATGAAG
Seq A exon
GTAAAGACGTGGTGATAGCAACTGTGAGCATATCTTCAGTGGGTACAATTTCTGAGGTACACAGTGAAGTTATTTTAGTTTGGGGCAGTGGGAGTTATGTTTGTTCCCCACTGACCCCATGTCTCCAATGCAGCGATATGAAATACGCTTTACACCATCACATTAGAACAAACCCTTAAATTGGAATTTCAGCCAAATGTTACTGTTACAGACTGATCAGCTTTTGGTCAAATATACTGCTATGGTTCCAAATCTTTTTTTTTTTTTTTTTCTTCTTCAAATTCACTAGAATTGTCCTGTAGCATCAGGGCATAATTACCATCTTCCCCAGTACATTAACTTCCAGGGCATTGTGGGGTAGTAGCAGTACGCACAGTGGTATTCTCCATAGAACTCAAGCATTTCTTATGGCACTAGTGTAGAAATTAGGAAGTAATCAAGAAGTAAGCAAGCTATGTAAACTCATCCAATCATTGAAGAGTAGCCACAGGTCAGACATTGCCTGCGTATCTGGTCAGTATCACGTGTAATGACTGCATTTGCCTTTCATGTTTTCAAATAACTTGTTTTTCTTCCCACTCTGCCAAATCTCCCTTCATTCCCAGTATTGTATGAAGTAGTTAAAGCAAACAGTGAGGACTGTACACTGCTTTCCTGAGTGCTGAGTGTTTTCAGGGGGTTAAATGGAAGTTTATGGAGAAAATGCAAACTGTGTTACTGGGCTGTGCACAGGTGCTGTGTTGCCTCTCATTGGACATTGCACATAATGGCTTTCTTTGACCTAAAATATAAGTCCTTTGCTGTCAGTAGAAATCTCCAGCTTTGTATCTGGAAGTGCTTTTGAGCAGAAAAGGGCCTGATGTCAAAATAAATCATTTATAGGAAGGGAGAAGTAGCCGAGCTGAGGCATTGTGATTACAACAGCATTCTGCTGAAAAGGAGGTCAGTAAACGATGAGCTTGAGACAGCAGTAGTTTCTTAAAGTGAGTCTTCAGTGTTCTCTGTCCTTGAAATACTGGTGTGACTTCAGTATTCATTTCTGCCTCCTGTCGCCATGGAGGCCCAAAGGTCTTGCTGACTCCCCAAGCACAGTTCCTGCTAGGGCTCCAGTATCAAGAACTGGTGACAATAGTAAATGTTCTCATGATCACCTCATTATTAGTATCCAGGGGCAACACTAGTTTAATGTACTCCGAACAGTCTGACTAGCAGTGTGGCTTCCTCCCCTTCCTCTCATATGGCTGGATGCCTCCCTTTCAAGAGCTAACCTTTACACAGCTTGAGATTTGGTGTATGAAACCCAACAGTTCACGTAGTTCAGCAGGAGCAGAGCAGTGAAATTATCTACTGAAGTTACAGGCTGTATTGTAAGTAAAGGGTTAATATTCTGAGTGTTTGTCTGGGCTGTTGAGTAAGAATCACTGCTGCAGTTGTAATAGGGCTGGACCCACTCCAGGTACATGGGCTGGCTTCTCCGAAAAGACTCAGCGGAAGCACATTCAGCTAAATGTTTCTGTGCAGTTCTCACTAGAGGGAGCCTAGCTACCAGTTTTCTGCAGCTTGTTTCAAGTGAGATTGTTAATGATAAGAAACAAACATAGGAGAAACTGAAGCATGTTTCCCATTGTCTGTCATTTATGCATATCAAATTTGTTTCTCAGACAAAATACTTTTTAAGAGGAAAACATTCCCATAACTTCATGTTATTTGGTTTACTGAAATAACAGTAAGGGTTCAGCAGCTTTTGTTACTGGTGGTTTAATTTAGATGGGGACTGCTTTGCATGTGAAATGCTGTTAGTGGTTTTAGCAGACTGTCACACCTGATTGCTGACACCAGGGAGGGCGCTGGTCAGGATCTGATGCAGTTCTTGTGTGCTCTCTGTCCCTGTAGGACTTAACACTGCACAAAATACTGAATTTAATCCACGTTTTTCTCCCTTCTTAGAGAAGGGAAAACTGTATTTGCATCTGTAGTTTATTTTAAAGTAAACACTTCAATGTGTTTACAAAGCAGCTGGAGAAACCTCAGCATTATGTTAGGTCAGAAATTAAACATGGTTTCAAGGGATTCAGTTTTGCTAAGCTACTGTAATATTTTGGGCATCAAACAGCTGTACAGTACCAAGGAAAACTCGGGTAGGATGCTCCTAGGAATCCCCTTCTAACACTTTTCTATGTTCTACAACAGGATAAGAGAGAGGTCTACTTTTGTGATTATTTTGAGTGAAATAGATTTTTTATTTTTTTTTTTTTACCGTATCCAAAGGTTTGACACTCAAAAAAAGATTGTTAGCTGTGTTTTAGAGAAGGCAGAAGTTGCCCAAAGCTTATACCATAACCCTCTGTGAATTGTGTATTTCTTTATTGATGTTCCGGACAGGAACTAATAGGCTGCTTTAATTTAG
Seq C2 exon
ATTAGCCAGAAGAAGCTGAAGAAATATGAAAAGGAGTATCATACCATGAGAGAGCAGCAAGCTCAGCAGGAGGATCCAATAGAAAGATTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225:ENSGALT00000001858:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.565
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]