GgaINT0126436 @ galGal4
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:959875-960774:+
Coord C1 exon
chr17:959875-959989
Coord A exon
chr17:959990-960627
Coord C2 exon
chr17:960628-960774
Length
638 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CCGGTCTGTTTGCTTTGCAGGTG
3' ss Score
12.02
Exon sequences
Seq C1 exon
GCTCACCCTGGCCGGATCCAGATCCTCGTGGCAGTAGTGCGGTACAAGACGCGGCTCAGCAAGCCCCGCCGTGGTCTCTGCTCTACGTGGTTGGCATCTCTCAACCCAGAGCAAG
Seq A exon
GTAACATTACTTGGACTATGTGAGGACCCTGTGTGCTTGCTTCAGAGCACAGCATGGATTGCACAGAACCGGTGGAGCTGGCAGCAACCTGCATGCTGGCAACATGCTGGAGTTGTCTCAACTGTTAGTGGAGCACCACTGCCAACAGGACAGGGTAAATGCACAGCCTTCCTCGCTGCTCCCTGTCTTTGGAGCATGATGTGCTCCCCACACTTGCCCTGAGCACTGTGAGCTCCCAATTTGCTCCCACTTGTTTGACCCTCCTACTCCCAACCCCAGTGCACTCTGCAGTTCTTGCTGAGGGCTGCTCCTGGCTTCCTGCAGCTGATATTGCTCTTTTTGCGGGACATCTTCAGCCTCATTGCAGCAGCTCTGGGAAGGATGGTCCTTCCTGTGACCATAACCATCCTGTCCTGCAAAGCCGATGTGTGTCCTGCTTTTATGCTCAAACCATAAAACCTCATAAGCTGGGTCCTTCTGCAAATGTGATGAGCACATGTGGTTTCCCTGCTGCAGAGTGGTAGGTGAAATACAGTCCATATCTCTGGAGCATCATGGAAGGAAGGGTTTGATGCTGCATCCAGTGTTACGGGCACAGTGATGTTGAACTGATGCTAACCGGTCTGTTTGCTTTGCAG
Seq C2 exon
GTGATGTCCGGGTACCTCTTTGGGTGAAGAAAGGAGGAATGAAGTTCCCAGCTAACCCCGACACTCCTGTGATCATGATTGGCCCTGGCACAGGGGTGGCACCTTTCCGAGCAGCTATACAGGAGCGAGTGGCACAAGGGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.2=74.4)
A:
NA
C2:
PF0017516=NAD_binding_1=PU(22.4=48.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCCTGGCCGGATC
R:
CTTTCTGCCCTTGTGCCACTC
Band lengths:
262-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]