RnoINT0099538 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2467794-2468198:-
Coord C1 exon
chr3:2468084-2468198
Coord A exon
chr3:2467944-2468083
Coord C2 exon
chr3:2467794-2467943
Length
140 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
ATGCTGTCTCCCTTCTGTAGCCG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GCTCACCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGCCTGAAGGAGCCCCGCCGTGGCCTCTGCTCCTCCTGGCTAGCATCCCTGACTCCTGGGCAAG
Seq A exon
GTAATCCATAGTTCTAAGGTTGGGAGAGAGTATGGCCTCAAGCTCCTGCTTTTCCTGTTCCTTCTACCACAGGCGCTCAAGCCCCAGTGAGCACCTCACCATTGTCTTTTGACCTCCTACATGCTGTCTCCCTTCTGTAG
Seq C2 exon
CCGGACCTGTCCGGGTGCCTCTGTGGGTTCGGCCTGGGAGCCTAGTGTTCCCAAAAACACCAGGCACACCCATTATCATGGTGGGGCCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAAGAACGAGTGGCCCATGGGCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
NA
C2:
PF0017516=NAD_binding_1=PU(22.4=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTACAGATCCTTGTGGCT
R:
TGGGCCACTCGTTCTTGAATG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]